PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10890.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 220aa    MW: 24166.8 Da    PI: 9.917
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10890.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.98.3e-34114170158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh+hA++R+RgsgGrF
  Zjn_sc00003.1.g10890.1.sm.mkhc 114 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGSGGRF 170
                                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-39112173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.404113173IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-29115170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-25116138IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860118138IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-25147170IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPPPHRSENG TIMIQFGHQM PDYDSSATQS TSGSQQEVSG MSEGNLNEHN DRSGNLNGYT  60
KSDENKMLSA LSLGNPETAH AHQKSDRNQS YMHHQIVGMV PSSRVPLPIE PAAEEPIYVN  120
AKQYHAILRR RQLRAKLEAE NKLVKSRKPY LHESRHQHAM KRARGSGGRF LNTKQQAEAT  180
GGCGGSSDAH RAPANNGGLF AKHEHGLPPG DLRYHPRGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-24114176264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985516.11e-124nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ9LVJ72e-40NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLK4AEG21e-122K4AEG2_SETIT; Uncharacterized protein
STRINGSi037269m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-33nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]