PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10450.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 292aa    MW: 31685.2 Da    PI: 5.3606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10450.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19116166155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++y+GVr+++ +grW+AeIrdp+    + +r++lg++ taeeAa+a+++ +++++g
  Zjn_sc00003.1.g10450.1.sm.mkhc 116 KKYRGVRYRS-SGRWAAEIRDPR----QgRRVWLGTYCTAEEAARAYDREARRIRG 166
                                     59******99.7*********94....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.71E-27116175No hitNo description
Gene3DG3DSA:3.30.730.105.6E-29117175IPR001471AP2/ERF domain
PROSITE profilePS5103222.168117174IPR001471AP2/ERF domain
PfamPF008478.3E-12117166IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-21117174IPR016177DNA-binding domain
SMARTSM003801.8E-34117180IPR001471AP2/ERF domain
PRINTSPR003677.5E-8118129IPR001471AP2/ERF domain
PRINTSPR003677.5E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MCGGAILSEL VPARVHRRVT AATLWPAAGR TSKRKAGADD VLTDDEFEAE FQLFEDDDDG  60
DVDEEEEESP PAAPSEPGVS APRARSRAGV VSTPSRRSSP SKKPRVAGAG PGASKKKYRG  120
VRYRSSGRWA AEIRDPRQGR RVWLGTYCTA EEAARAYDRE ARRIRGNSAR LNFPEPREGQ  180
RVRTPAVVID LNLPAVSDDD LHCAAGGEDT MDVDAASSGN ERFESVVSEP TNGGAISGAD  240
RAAGALQYAA MISECDRQME QIAALKRDLE IREVRLAARR EQLLRLISPA LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18107175473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370712e-56BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275482e-56KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.12e-82ethylene-responsive transcription factor RAP2-12
TrEMBLA0A3L6SIM68e-83A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like
STRINGPavir.Ib00525.1.p4e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-21related to AP2 12