PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g05940.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 404aa MW: 42685.6 Da PI: 5.9043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g05940.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	197	243	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Zjn_sc00003.1.g05940.1.sm.mkhc 197 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 243 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-11	197	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	198	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	198	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.29E-5	207	246	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.1E-5	281	328	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MGGHGNRHRH QEVGVLVDDE GEELEQHGGR ACGGATSGVV EQGVGDGGRG LEAAGMVFEA 60 SSSVGSVSAT MASSQILGWP PPEQPPQQPI HHHHSIGGGQ SPFFPLLPPQ PPHPPPPFFA 120 DFYARRALQF AYDHSGGGPS SSSDPLGLGG LYMGHHHGGS PVSGMMMPPP FGSSPFGDFG 180 RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA SLLAEVIQHV 240 KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRPDL LPDLIRALKA 300 LRLRALKAEI TTLGGRVKNV LFVTGDDSAG CPGGDGDDEQ QDQPQAPMSP QHTVASIQDA 360 LRAVMERAAS LAAEEPGAAS SGGGLKRQRT TSLSAILENS ASHY

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MGGHGNRHRH QEVGVLVDDE GEELEQHGGR ACGGATSGVV EQGVGDGGRG LEAAGMVFEA  60
SSSVGSVSAT MASSQILGWP PPEQPPQQPI HHHHSIGGGQ SPFFPLLPPQ PPHPPPPFFA  120
DFYARRALQF AYDHSGGGPS SSSDPLGLGG LYMGHHHGGS PVSGMMMPPP FGSSPFGDFG  180
RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA SLLAEVIQHV  240
KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRPDL LPDLIRALKA  300
LRLRALKAEI TTLGGRVKNV LFVTGDDSAG CPGGDGDDEQ QDQPQAPMSP QHTVASIQDA  360
LRAVMERAAS LAAEEPGAAS SGGGLKRQRT TSLSAILENS ASHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649780.1	1e-174	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	2e-77	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1E5UY76	0.0	A0A1E5UY76_9POAL; Transcription factor bHLH30
STRING	OB03G21490.1	1e-174	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]