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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g05800.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24330.8 Da PI: 7.0054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Zjn_sc00003.1.g05800.1.sm.mk 26 QYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATAEAAARAYDAALLCLKG 75 69****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-30 | 25 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.286 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 26 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.81E-16 | 26 | 85 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-20 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVKSPSNPAA TAFTEGACRG KAAARQYKGV RMRSWGSWVS EIRAPNQKRR IWLGSYATAE 60 AAARAYDAAL LCLKGADAVL NFPSSSPSRN VAGGHRGHSD LAAGSVSPRS IQSAAAAAAA 120 AFDTCTSVDA SGDDRCSSSD GASATATTSA SLSPTPRRDD RHGRHGQEHT TPSSSAAAIT 180 GSSAQGEEMW TDLLDVLASP KCVDLMAARA APFSSTWEEP EDDGEMMRLW SFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 26 | 83 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727660 | 8e-74 | KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795709.1 | 1e-67 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A3L6TSU0 | 8e-67 | A0A3L6TSU0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia03856.1.p | 2e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-25 | ERF family protein |