PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g16790.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 105aa MW: 11424.9 Da PI: 10.1441

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g16790.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	5.9e-18	33	83	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r++ g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++l+g+ Zjn_sc00002.1.g16790.1.am.mk 33 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPTPEMAAAAYDVAALALRGA 83 68***975..*****954...49**********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.9E-12	33	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.45E-19	34	90	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.481	34	90	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-27	34	90	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-25	34	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.9E-7	35	46	IPR001471	AP2/ERF domain
CDD	cd00018	1.59E-13	35	90	No hit	No description
PRINTS	PR00367	9.9E-7	72	92	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MEPDPEQEVV QDAAGTPFPG SVVRRARADT RHPVYRGIRY RGGKWVSEIR EPRKSNRIWL 60 GTYPTPEMAA AAYDVAALAL RGADAALNFP GAARRGCQYG GPRAG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236527	9e-75	AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence.
GenBank	AC236542	9e-75	AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685545.1	4e-35	ethylene-responsive transcription factor ERF024
Swissprot	Q9LYD3	2e-28	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1E5WJH0	4e-34	A0A1E5WJH0_9POAL; Uncharacterized protein
TrEMBL	K4AK41	4e-34	K4AK41_SETIT; Uncharacterized protein
STRING	Si039264m	6e-35	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-20	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]