PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g16790.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 105aa MW: 11424.9 Da PI: 10.1441 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 33 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r++ g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++l+g+ Zjn_sc00002.1.g16790.1.am.mk 33 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPTPEMAAAAYDVAALALRGA 83 68*****975..*********954...49************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-12 | 33 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-19 | 34 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.481 | 34 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 34 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-25 | 34 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-13 | 35 | 90 | No hit | No description |
PRINTS | PR00367 | 9.9E-7 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEPDPEQEVV QDAAGTPFPG SVVRRARADT RHPVYRGIRY RGGKWVSEIR EPRKSNRIWL 60 GTYPTPEMAA AAYDVAALAL RGADAALNFP GAARRGCQYG GPRAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236527 | 9e-75 | AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence. | |||
GenBank | AC236542 | 9e-75 | AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685545.1 | 4e-35 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9LYD3 | 2e-28 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1E5WJH0 | 4e-34 | A0A1E5WJH0_9POAL; Uncharacterized protein | ||||
TrEMBL | K4AK41 | 4e-34 | K4AK41_SETIT; Uncharacterized protein | ||||
STRING | Si039264m | 6e-35 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-20 | ERF family protein |
Publications ? help Back to Top | |||
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