PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g16600.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 641aa MW: 71463 Da PI: 5.5196

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g16600.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.7	8.7e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk Zjn_sc00002.1.g16600.1.sm.mk 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATK 85 79**************************.99**********95334455777******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Zjn_sc00002.1.g16600.1.sm.mk 86 SGYWKATGKDRNVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 **********9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.529	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRNVNS HRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIMEHYGAV QHPIEQPQWT 180 ACNVDHRSPT LDLSCDVRGD DFESTSFSFP AEAPMDYTHG GFGMQMSASH EDGKWMQFLS 240 EDAFNATNNP FFTNPASSSF SCIPSKVDVA LECARLQHRL SLPPLEVEDF PHGVSLDTKA 300 GVLRSNPNEV DILQEFLSVA SASQELINGS SSSYAAEMWP GAGSSNVSTH YGNELSSLVE 360 LGVKAKVEAD NFYHIEGCVG TSSSGFALKS GHVDEPVRLV EISEMEEELK EEKKQVENLR 420 GVRLHNNDLG EIVVEGDESN PTECITQYPI TDTADNSGEA GHLTDPTDAG GGLDTAPIFS 480 QSQPDDFAIG FDDVDNPSAS FELYEKVDVK HAGLFVSRVG AAKTFFHRVE PSKKVSFHLS 540 PVASDVSKAI EKFHFPVNVT TKVSGRVSIF SKFKALIRDK FLMKPSYQRS IGSKEAAAGS 600 ELLNIVTLLL TPKEATGPAA EQELVMRKKQ ENRRFKEYSP N

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRNVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIMEHYGAV QHPIEQPQWT  180
ACNVDHRSPT LDLSCDVRGD DFESTSFSFP AEAPMDYTHG GFGMQMSASH EDGKWMQFLS  240
EDAFNATNNP FFTNPASSSF SCIPSKVDVA LECARLQHRL SLPPLEVEDF PHGVSLDTKA  300
GVLRSNPNEV DILQEFLSVA SASQELINGS SSSYAAEMWP GAGSSNVSTH YGNELSSLVE  360
LGVKAKVEAD NFYHIEGCVG TSSSGFALKS GHVDEPVRLV EISEMEEELK EEKKQVENLR  420
GVRLHNNDLG EIVVEGDESN PTECITQYPI TDTADNSGEA GHLTDPTDAG GGLDTAPIFS  480
QSQPDDFAIG FDDVDNPSAS FELYEKVDVK HAGLFVSRVG AAKTFFHRVE PSKKVSFHLS  540
PVASDVSKAI EKFHFPVNVT TKVSGRVSIF SKFKALIRDK FLMKPSYQRS IGSKEAAAGS  600
ELLNIVTLLL TPKEATGPAA EQELVMRKKQ ENRRFKEYSP N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	5e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	5e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	5e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	5e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	5e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	5e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	5e-56	1	162	15	174	NAC domain-containing protein 19
4dul_A	4e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	4e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468623.1	0.0	uncharacterized protein LOC8085734
TrEMBL	K4A6N6	0.0	K4A6N6_SETIT; Uncharacterized protein
STRING	Si034541m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-121	NAC domain containing protein 28