PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g13080.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 782aa MW: 86437.6 Da PI: 9.0942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g13080.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.3e-07	708	749	14	54
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L+ellP++s + ++ + s + L++++ YIksL Zjn_sc00002.1.g13080.1.am.mkhc 708 DEINDLISKLQELLPESSrRRNASRSSASKLLKETCSYIKSL 749 68************6647777889*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.130.10.80	7.6E-32	267	470	IPR015916	Galactose oxidase, beta-propeller
SuperFamily	SSF117281	1.15E-29	299	464	No hit	No description
SMART	SM00612	1.5	337	377	IPR006652	Kelch repeat type 1
Pfam	PF01344	7.0E-14	366	412	IPR006652	Kelch repeat type 1
SMART	SM00612	3.1E-10	378	425	IPR006652	Kelch repeat type 1
PROSITE profile	PS50888	9.483	694	749	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	708	765	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-7	708	767	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-5	708	749	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
RERESTILRE ERERGREGGS RGVADTAASF GAAVASSGAA ASLVSRHLSA RQHTSASAAP 60 ATSWTASLSS AAPAARSSAR PLPQSNSSTT ECGERGFLRR RGALPAQIWW CLRSPIHAFD 120 LLGEEEEEEK IMKQQEKNLG KKGEGMMLDG KTCLSRSVPS SCEQDSEWTY LPHEVICGKR 180 PAQEDMEFEE DLDADGGGGK RSKPPSPQPH TPDISESRGR HSRHASDDGG EQYNTAGNLI 240 GSIGRDLTIS CLLRLSRSEY GSVASLSRDF RSLVRTGEIY RLRRQNGVAE QWVYFSCNVL 300 EWDAYDPYRE RWIPVPKMPP DECFMCVDKE SLAVGTELLV FGMARIVFRY SILTNSWTRA 360 DPMNSPRCLF GSTSVGKKAY VAGGTDSSGR ILRSAEMYDS EKHTWTTLPS MNRARKMCSG 420 VFMDGPRTYV GGSIELNSWV PDERPPEWKL IARRPTGNFV YNCAEYSACV AHATRRDAMR 480 RIATHGRKET HGRAAESLRC VDARNFFLFH GPSVHRSSFS PRGRPVPSPS TPQVAHARST 540 IMRPNLPVRC NVCVAQLWRH QPTVASDGPG PGCPSRAEEG QSGTGACGGE SGPLWLELQV 600 GRDAAACPSS RVSRSIQSGL MRQSACGWPR PHEGGKERLV LLPARQPGYL LKPKALQREI 660 CYLTVILRVP AGLLKRQQRR RARAPCVRID GEPLPETMSG RRGRISDDEI NDLISKLQEL 720 LPESSRRRNA SRSSASKLLK ETCSYIKSLH REVGDLSDRL SELMSTMDND SPQAEIIRSL 780 LR

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

RERESTILRE ERERGREGGS RGVADTAASF GAAVASSGAA ASLVSRHLSA RQHTSASAAP  60
ATSWTASLSS AAPAARSSAR PLPQSNSSTT ECGERGFLRR RGALPAQIWW CLRSPIHAFD  120
LLGEEEEEEK IMKQQEKNLG KKGEGMMLDG KTCLSRSVPS SCEQDSEWTY LPHEVICGKR  180
PAQEDMEFEE DLDADGGGGK RSKPPSPQPH TPDISESRGR HSRHASDDGG EQYNTAGNLI  240
GSIGRDLTIS CLLRLSRSEY GSVASLSRDF RSLVRTGEIY RLRRQNGVAE QWVYFSCNVL  300
EWDAYDPYRE RWIPVPKMPP DECFMCVDKE SLAVGTELLV FGMARIVFRY SILTNSWTRA  360
DPMNSPRCLF GSTSVGKKAY VAGGTDSSGR ILRSAEMYDS EKHTWTTLPS MNRARKMCSG  420
VFMDGPRTYV GGSIELNSWV PDERPPEWKL IARRPTGNFV YNCAEYSACV AHATRRDAMR  480
RIATHGRKET HGRAAESLRC VDARNFFLFH GPSVHRSSFS PRGRPVPSPS TPQVAHARST  540
IMRPNLPVRC NVCVAQLWRH QPTVASDGPG PGCPSRAEEG QSGTGACGGE SGPLWLELQV  600
GRDAAACPSS RVSRSIQSGL MRQSACGWPR PHEGGKERLV LLPARQPGYL LKPKALQREI  660
CYLTVILRVP AGLLKRQQRR RARAPCVRID GEPLPETMSG RRGRISDDEI NDLISKLQEL  720
LPESSRRRNA SRSSASKLLK ETCSYIKSLH REVGDLSDRL SELMSTMDND SPQAEIIRSL  780
LR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	673	679	LKRQQRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063907	4e-97	BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBank	EU964585	4e-97	EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
GenBank	FP093583	4e-97	FP093583.1 Phyllostachys edulis cDNA clone: bphyst039h19, full insert sequence.
GenBank	FP095220	4e-97	FP095220.1 Phyllostachys edulis cDNA clone: bphyst033d21, full insert sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	4e-23	bHLH family protein