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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g12470.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16307 Da PI: 7.5138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6.1e-13 | 111 | 145 | 2 | 40 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae 40 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae Zjn_sc00002.1.g12470.1.sm.mkhc 111 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAE 145 69*******.**********72....35**********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-18 | 110 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-7 | 111 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.16E-15 | 111 | 145 | No hit | No description |
SMART | SM00380 | 6.2E-8 | 111 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.542 | 111 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-11 | 111 | 145 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-9 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 134 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MCGGAILTEL IPPPRRATSR PVTAGSLWPA SCKKGGSGRN KKRGRVDDAE TDDFEAAFEE 60 FDDDFDEMEE DEDDDYGYDG SRPFVFASKS AFPAAHDGRA ARSQKKRGRR HFRGIRQRPW 120 GKWAAEIRDP HKGTRVWLGT FNTAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 110 | 145 | 4 | 40 | ATERF1 |
3gcc_A | 2e-13 | 110 | 145 | 4 | 40 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 109 | QKKRGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034434 | 5e-43 | BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds. | |||
GenBank | BT039300 | 5e-43 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. | |||
GenBank | BT063174 | 5e-43 | BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds. | |||
GenBank | EU941438 | 5e-43 | EU941438.1 Zea mays clone 1452173 mRNA sequence. | |||
GenBank | EU970244 | 5e-43 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. | |||
GenBank | KJ726938 | 5e-43 | KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791485.1 | 1e-54 | ethylene-responsive transcription factor 1-like | ||||
Refseq | XP_025791486.1 | 1e-54 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q9SSA8 | 1e-25 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2S3ITL4 | 3e-53 | A0A2S3ITL4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00526.1.p | 2e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 8e-15 | related to AP2 12 |