PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g12450.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 312aa    MW: 33299.2 Da    PI: 4.198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g12450.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1877127155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y GVr+++ +g+W+Ae+rdp+    +  r++lg+f tae Aa+a++aa++ l+g
  Zjn_sc00002.1.g12450.1.sm.mk  77 SQYYGVRRRP-WGKWAAEVRDPV----KgVRVWLGTFPTAEAAARAYDAAARDLRG 127
                                   6788******.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-2177136IPR016177DNA-binding domain
PROSITE profilePS5103224.18478135IPR001471AP2/ERF domain
SMARTSM003802.5E-3078141IPR001471AP2/ERF domain
CDDcd000187.11E-1678137No hitNo description
PfamPF008477.3E-1278127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3078136IPR001471AP2/ERF domain
PRINTSPR003674.9E-107990IPR001471AP2/ERF domain
PRINTSPR003674.9E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MCGGAILAEL IPTEPARRVT RGHPWAAGKT SDDDFEAAFR AFDDFENSDG EDNEGPVGFG  60
GASAAGSKRS SSRRRPSQYY GVRRRPWGKW AAEVRDPVKG VRVWLGTFPT AEAAARAYDA  120
AARDLRGAGA KLNFPAAVDK AARTGKRRAD ANINTATPYV ADLVDVDDEE GRGARAPVTA  180
ANEGEASEEA SSASSGALPD FSWQGVSASD DDAARPVGLD VDVETAEPSV ELCDAPKRLR  240
SEAEEAESTP PAAAHDEDLL FDPFAFGEQL SFFNGGAYEM LFARDTVQSG EGMGLWSFDD  300
DCLVDDTVVW YT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18781351472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876883e-52BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699183e-52JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-76ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T8I6493e-75A0A2T8I649_9POAL; Uncharacterized protein
TrEMBLA0A3L6SDZ02e-75A0A3L6SDZ0_PANMI; Uncharacterized protein
STRINGPavir.Ia04158.1.p8e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.22e-18ERF family protein