PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g12190.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 465aa    MW: 49792.2 Da    PI: 8.8912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g12190.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14241292155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Zjn_sc00002.1.g12190.1.am.mk 241 QRMTHIAVERNRRRQMNEHLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 292
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.32E-14239296No hitNo description
Gene3DG3DSA:4.10.280.106.1E-14240296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859240291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17240306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11241292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10246297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAMHTKLELD EQGDMVGSPV PATNNGTGPP DREPDHPPPP SMGHGTRNNT PSFYSLCKSW  60
PGPSPKAQNP ARGCRVRVRL TRDSRLIKRG VAGQPGEHAH TRRSPTRLLL ASRVRSSPIT  120
KFRACVCAAG LLAMALEAVV FSQAGAGHFG YGRVDSPYTM PWCDLPGATG FGFAGDWGYD  180
GLLASVAPDG ADEWETASAK QDQSSEASAV GKGTAEPAAA AGRRKRRRAK VVKNKEEIET  240
QRMTHIAVER NRRRQMNEHL AVLRSLMPPS YAHRGDQASI VGGAINYVRE LEQLLQSLEV  300
QKSIKNRDAG CSCTDAAGKS PFAGFFTFPQ YSTSSSHAGC AAAATSSNNT SNVANGEAAG  360
SGASGDRAPA VADIEVTMVE GHASLKVLVP QRPKQLLKLV AGLQHLRVPP LHLNVTSVDA  420
MVLYTFSLKV EDDSKMGSVE DIATAVHEIL SRIRRQEVEE ETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227RKRRR
2241252RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420301e-106BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-130transcription factor bHLH94-like
TrEMBLA0A0A9F3U91e-139A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.J40759.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-61bHLH family protein