PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g09440.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 274aa    MW: 29649.4 Da    PI: 8.9845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g09440.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.4e-17108160254
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa 
  Zjn_sc00002.1.g09440.1.am.mk 108 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAS 160
                                   788899*********************************************96 PP
2HD-ZIP_I/II115.62.8e-37108201191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalkeen 77 
                                   +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRA    Rtk+kq+E+d+e+Lkr++++l+een
  Zjn_sc00002.1.g09440.1.am.mk 108 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCETLTEEN 188
                                   69*************************************************988889************************ PP

                   HD-ZIP_I/II  78 erLekeveeLreel 91 
                                   +rL++e +eLr +l
  Zjn_sc00002.1.g09440.1.am.mk 189 RRLQRELQELR-AL 201
                                   **********9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1797158IPR009057Homeodomain-like
SuperFamilySSF466895.01E-17101160IPR009057Homeodomain-like
PROSITE profilePS5007116.52104164IPR001356Homeobox domain
SMARTSM003891.2E-14106168IPR001356Homeobox domain
CDDcd000861.42E-13108166No hitNo description
PfamPF000463.0E-14108160IPR001356Homeobox domain
CDDcd146860.00625155200No hitNo description
SMARTSM003408.0E-24168211IPR003106Leucine zipper, homeobox-associated
PfamPF021836.3E-11168202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAQEDVHLSD ARLALGLSLG GGGGASSEAA RHSPTSSRPR RASPCALEPS LTLSMPDEAT  60
AHSVSSLSVA CGVKRERVEE AETTERASST AAAAQGAGAE DDDDGSTRKK LRLTKEQSAL  120
LEDRFKEHST LNPKQKVALA KQLNLRPRQV EVWFQNRRAS RARRTKLKQT EVDCEFLKRC  180
CETLTEENRR LQRELQELRA LKFAPPSATA AAPGVPAPPP FYMQLPAATL TICPSCDRLG  240
GPGATAKADP DRPKARTATT QHHFFNPFTH SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797738.11e-116homeobox-leucine zipper protein HOX19-like isoform X1
SwissprotA2XE761e-105HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-105HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2S3ISP91e-115A0A2S3ISP9_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFD71e-115A0A2T7CFD7_9POAL; Uncharacterized protein
STRINGOPUNC03G09020.11e-108(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-47HD-ZIP family protein