PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g07090.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 448aa    MW: 47900.6 Da    PI: 8.9415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g07090.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016197220123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C+ Cg++  r+ +L+ H+ + H
  Zjn_sc00002.1.g07090.1.sm.mk 197 FPCKVCGEVLGRPQQLELHQAMkH 220
                                   89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.767197225IPR007087Zinc finger, C2H2
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SuperFamilySSF563997.29E-12222434No hitNo description
Gene3DG3DSA:3.90.228.105.0E-9223435IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAVGGSRSS LLRGFLSLFF LLFVHIGHAS CCFSLGPAAR QREDDDSTET GADGIVGARG  60
ASKRRKMSPL AFSPAASSSA VAEERVRRRN VSSLVTSLRV YLHRIFSTGT KNGAVAAREE  120
EEVVTTTVSS PQAQSLAPQP SASLVLSTPS SPCSSSSFTS PISSRSLGVT PVPSSLQKLL  180
QAGRQSSRSF AARGDLFPCK VCGEVLGRPQ QLELHQAMKH SLSELSDLDS SMNIIRMIFL  240
AGWKPAGDAP AVRRVLRIHH HPRALARFEE YRDLVRARAA RRCAEGAAVE ERCIADGNER  300
LRFHCSTMLC PSLGSAGGAC GSPYCCVCST LRHGFAGKQA DVDGVATYAS AWAAHASLPE  360
DVEREFAFLQ VRRAMLVCRV VAGRVGRGAA DDKVAYDSIV PVRAGGVGGD DDDAELLVFN  420
PRAVLPCFVI IYSSQQSVAT RRPACKQY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368840.0BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds.
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313429.10.0uncharacterized protein LOC8054291
TrEMBLA0A0A9L7210.0A0A0A9L721_ARUDO; Uncharacterized protein
STRINGSb01g040170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.14e-41C2H2 family protein