PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g02870.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 329aa MW: 35958.4 Da PI: 6.3772

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g02870.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.4	2.2e-09	16	41	1	26
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhPtdee+v++yL++k+ ++ Zjn_sc00002.1.g02870.1.sm.mkhc 16 LPPGFRFHPTDEEIVTHYLTPKALDR 41 79*******************98776 PP
2	NAM	91	2.1e-28	50	115	64	129
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +d+ky+tg+r+nrat+sgyWkatgkdke+++ +g lvg+kktLvfy+grap+gekt+Wvmhe+rle Zjn_sc00002.1.g02870.1.sm.mkhc 50 EDRKYPTGTRTNRATESGYWKATGKDKEIFRGRGVLVGMKKTLVFYRGRAPRGEKTEWVMHEFRLE 115 689************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.398	1	138	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-44	8	138	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	17	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MSEVSVINQT AGQLELPPGF RFHPTDEEIV THYLTPKALD RFFTSGIIGE DRKYPTGTRT 60 NRATESGYWK ATGKDKEIFR GRGVLVGMKK TLVFYRGRAP RGEKTEWVMH EFRLEGKLPQ 120 PLPRSAKDEW AVCKVVNKEL LAAKPGASIV TAGAEIERVG SLGFISDLLD SAAELPPLMD 180 PTFGADVDEV IDFKGLASTS TSGHGAAPGG VSYLPVKTEE QYLHHHQQPQ STPMFYTGSS 240 PYFSLPEVNS GDIQTAIRRY CKAELVASGQ TTSVVSPSRE TGLSTDPNAA AGYAEISSSA 300 TPSSSHHHHH PFLQELDDPV LNLADIWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-33	13	144	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-33	13	144	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-33	13	144	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-33	13	144	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	13	144	17	174	NAC domain-containing protein 19
3swm_B	4e-33	13	144	17	174	NAC domain-containing protein 19
3swm_C	4e-33	13	144	17	174	NAC domain-containing protein 19
3swm_D	4e-33	13	144	17	174	NAC domain-containing protein 19
3swp_A	4e-33	13	144	17	174	NAC domain-containing protein 19
3swp_B	4e-33	13	144	17	174	NAC domain-containing protein 19
3swp_C	4e-33	13	144	17	174	NAC domain-containing protein 19
3swp_D	4e-33	13	144	17	174	NAC domain-containing protein 19
4dul_A	3e-33	13	144	14	171	NAC domain-containing protein 19
4dul_B	3e-33	13	144	14	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956395	1e-105	EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984514.1	1e-167	NAC domain-containing protein 79
TrEMBL	A0A368SRF4	1e-166	A0A368SRF4_SETIT; Uncharacterized protein
STRING	Pavir.Ib01526.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	3e-68	NAC domain containing protein 46