PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g02730.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 323aa MW: 33759.9 Da PI: 6.2986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g02730.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	228	250	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + ++C ++ar G+Ck G++C+F H Zjn_sc00002.1.g02730.1.sm.mk 228 GFKPCLYYAR-GFCKNGSSCRFVH 250 5689****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.563	226	253	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-5	228	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-5	229	250	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	230	250	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDAYEATKVV FSRIQALDPD NAAKIMGLLL IQDHGDKEMI RLAFGPESLL HAVMAKARKD 60 LGLLPPASPT SVAAAGHVPF LQLPRQSSGR AGAGAPSPLS VSSPSCWAQA PPFSRSNNGS 120 NGAAEEAQAP DGEELPSPVN GGAAPFFPQG RGALLEDMQL QEQLAFLNEG GVNSTHQFPP 180 FDGGECPSPG LGDGGGLFSY GLGWPNGGPA HRRSASVNEL CLGGDGFGFK PCLYYARGFC 240 KNGSSCRFVH AGLSDDAAAL SSPRMDVADQ QQHCQDLLLR SKSQRLGPAA FPYSPTGSLP 300 GSPSAAGKCL NLLLQQQQQQ HDR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975727	4e-70	EU975727.1 Zea mays clone 498431 nucleic acid binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467925.1	1e-153	zinc finger CCCH domain-containing protein 22 isoform X1
Swissprot	Q10M00	1e-141	C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22
TrEMBL	A0A3L6TFW3	1e-162	A0A3L6TFW3_PANMI; Zinc finger CCCH domain-containing protein 22-like
STRING	Sb01g036490.1	1e-152	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1433	11	15

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]