PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g00090.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 410aa MW: 44579.9 Da PI: 9.935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g00090.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.7e-05	187	234	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ ++ Zjn_sc00002.1.g00090.1.sm.mkhc 187 RKVHKAEREKLKRDQLNDLFVELGDMLDED----RQNNGKACILADTTRILR 234 677889*********************997....455666666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-11	183	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	183	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.633	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MRPAVEGHAA ARAGRGRRGL PSTRARVLLS TRTTPNLLTH AHRRVGLKSS PDPRLVPRGH 60 ATGARRNDTR RYVPALREGP RPRASSSLFP VPGCPLKAEL KTNEPRTAAS EDAEEARRRG 120 GAARGSSPIR TRSPVPSGAE GRSESEELGM VPSDRGSVAT AVSTAAATDK LPLGPVSSKK 180 IQKKAPRKVH KAEREKLKRD QLNDLFVELG DMLDEDRQNN GKACILADTT RILRDLLSQV 240 ESLRKENSTL QSESHYVTME RDEMRDETSA LCKEILELQN ELTRLSSNSG WGHGTAESDS 300 ASAVFPSQQP VQPPSVASTL IPLQQPLPST TVIEHPYAAA PRELKLFPNA GYEPAEDQEA 360 TNFVTRPQAR YPIQAASWPV SLFSGLPRME DEQCSSTTTG SSKEASTGRD

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MRPAVEGHAA ARAGRGRRGL PSTRARVLLS TRTTPNLLTH AHRRVGLKSS PDPRLVPRGH  60
ATGARRNDTR RYVPALREGP RPRASSSLFP VPGCPLKAEL KTNEPRTAAS EDAEEARRRG  120
GAARGSSPIR TRSPVPSGAE GRSESEELGM VPSDRGSVAT AVSTAAATDK LPLGPVSSKK  180
IQKKAPRKVH KAEREKLKRD QLNDLFVELG DMLDEDRQNN GKACILADTT RILRDLLSQV  240
ESLRKENSTL QSESHYVTME RDEMRDETSA LCKEILELQN ELTRLSSNSG WGHGTAESDS  300
ASAVFPSQQP VQPPSVASTL IPLQQPLPST TVIEHPYAAA PRELKLFPNA GYEPAEDQEA  360
TNFVTRPQAR YPIQAASWPV SLFSGLPRME DEQCSSTTTG SSKEASTGRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148562.1	1e-116	amelogenin precursor like protein
Refseq	XP_008676027.1	1e-116	amelogenin precursor like protein isoform X1
Refseq	XP_008676033.1	1e-116	amelogenin precursor like protein isoform X1
Refseq	XP_008676036.1	1e-116	amelogenin precursor like protein isoform X1
Swissprot	Q69V10	2e-77	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	B6T4L8	1e-114	B6T4L8_MAIZE; Amelogenin like protein
TrEMBL	B8A2P8	1e-114	B8A2P8_MAIZE; BHLH transcription factor
STRING	GRMZM2G350312_P02	1e-115	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-32	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]