 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00001.1.g09160.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
SBP |
| Protein Properties |
Length: 231aa MW: 23756.7 Da PI: 10.2468 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00001.1.g09160.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 67.3 | 3.1e-21 | 185 | 231 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48
Cq+++C a+l++ak+yh+rhkvCe+h+ka vv+v+g++qrfCqqCsr
Zjn_sc00001.1.g09160.1.am.mk 185 CQADRCGANLADAKRYHKRHKVCETHAKAHVVIVAGRQQRFCQQCSR 231
**********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MWFLYTYSRT AYAHAPRHGT GPHVRAVSTH VARWQDLFIP LSPFFPTAPA SSRPPSAHEH 60
ELKATAAPAP PRQPAGSYPP SPSTAPPPPP NLATMDRRDR TRRATSAAAS MAALAAAAAA 120
GEGAENGTAT AMAEDMNTPM LLTGAASGVS LTPTAAVPVS ARNGPAAAAG AVEAGAGGGG 180
GGPSCQADRC GANLADAKRY HKRHKVCETH AKAHVVIVAG RQQRFCQQCS R
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ul4_A | 7e-18 | 175 | 231 | 1 | 57 | squamosa promoter binding protein-like 4 |
| 1wj0_A | 5e-18 | 180 | 231 | 1 | 52 | squamosa promoter-binding protein-like 12 |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP096626 | 3e-33 | FP096626.1 Phyllostachys edulis cDNA clone: bphylf027p18, full insert sequence. |
