PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g06740.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 683aa MW: 75143.9 Da PI: 9.2023 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.8 | 2.6e-10 | 275 | 334 | 1 | 58 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W ++++y+ + ++ Zjn_sc00001.1.g06740.1.sm.mkhc 275 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDINGKEWLFQFRYWPNNNS 334 89**************************555566778*****************766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-19 | 267 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.19E-13 | 272 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-15 | 273 | 336 | No hit | No description |
Pfam | PF02362 | 1.5E-7 | 275 | 334 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0014 | 275 | 371 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MALQTSVWPP SMHAPQNVVD RKENPAKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA 60 YEFDRPPVGY ENLLPGRTFI HAPERKFDEM HDRPTTPASM NQPMRERNAN GHGQPTNLDP 120 TYYALYHREG PHPSSVNDLG HHGGENESFS SRRVGISDAS TGVDAGFKLD SHHLSDQPSL 180 SVGLPSSFAS ANGPKEHIRV APNQQQVQMA SSSLQKQFYS HPVSGYNEFQ AQMRNGRPRM 240 DAKARSQLLP RYWPRITDQE LQHLSGDSHS VTPLFEKMLS ASDAGRIGRL VLPKKCAEAY 300 FPPISQPEGL PLKVQDINGK EWLFQFRYWP NNNSRIRLDP EGKLVMGFRK ATNISTEQDQ 360 TTKPPNGVPT SSEANGKVPA SDPSPNTAVP RQYKVNTESN SSSPAEQATG SKMDKGGAAQ 420 KEGPGTGQSS PGPVKRKATS VGQKIKRLRM DNEESMELKI TWDEAQELLR PPPKAPSIVV 480 IDGHEFEEYE EPPILGPGGA KKSNAKIEAD TIDASDGLDT LANLAILGEG EAFPSQPTTK 540 HPRHRPGCSC IVCIQPPSGK GPKHKHSCTC NVCMMVRRRF RTLTLRREKR KDTDPPRKKD 600 TGHTADTVSQ IGSGPPATGA SKISSPQKAD ANANRPQDMA VDHKMTSSPV KNHIDLNIHP 660 DRDDEQSPKA DAAGATRLRD DPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-42 | 254 | 353 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 586 | 598 | REKRKDTDPPRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647113.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1E5VPN0 | 0.0 | A0A1E5VPN0_9POAL; B3 domain-containing protein | ||||
STRING | OB07G24510.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 7e-74 | HSI2-like 1 |