PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g06740.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 683aa    MW: 75143.9 Da    PI: 9.2023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g06740.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-10275334158
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 
                                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W ++++y+ + ++
  Zjn_sc00001.1.g06740.1.sm.mkhc 275 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDINGKEWLFQFRYWPNNNS 334
                                     89**************************555566778*****************766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-19267335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-13272334IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-15273336No hitNo description
PfamPF023621.5E-7275334IPR003340B3 DNA binding domain
SMARTSM010190.0014275371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MALQTSVWPP SMHAPQNVVD RKENPAKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA  60
YEFDRPPVGY ENLLPGRTFI HAPERKFDEM HDRPTTPASM NQPMRERNAN GHGQPTNLDP  120
TYYALYHREG PHPSSVNDLG HHGGENESFS SRRVGISDAS TGVDAGFKLD SHHLSDQPSL  180
SVGLPSSFAS ANGPKEHIRV APNQQQVQMA SSSLQKQFYS HPVSGYNEFQ AQMRNGRPRM  240
DAKARSQLLP RYWPRITDQE LQHLSGDSHS VTPLFEKMLS ASDAGRIGRL VLPKKCAEAY  300
FPPISQPEGL PLKVQDINGK EWLFQFRYWP NNNSRIRLDP EGKLVMGFRK ATNISTEQDQ  360
TTKPPNGVPT SSEANGKVPA SDPSPNTAVP RQYKVNTESN SSSPAEQATG SKMDKGGAAQ  420
KEGPGTGQSS PGPVKRKATS VGQKIKRLRM DNEESMELKI TWDEAQELLR PPPKAPSIVV  480
IDGHEFEEYE EPPILGPGGA KKSNAKIEAD TIDASDGLDT LANLAILGEG EAFPSQPTTK  540
HPRHRPGCSC IVCIQPPSGK GPKHKHSCTC NVCMMVRRRF RTLTLRREKR KDTDPPRKKD  600
TGHTADTVSQ IGSGPPATGA SKISSPQKAD ANANRPQDMA VDHKMTSSPV KNHIDLNIHP  660
DRDDEQSPKA DAAGATRLRD DPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-422543532126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1586598REKRKDTDPPRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647113.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1E5VPN00.0A0A1E5VPN0_9POAL; B3 domain-containing protein
STRINGOB07G24510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.17e-74HSI2-like 1