PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g06500.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 877aa MW: 93760.9 Da PI: 10.3517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g06500.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.8e-53	497	625	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ew+fFs+rd+ky++g r+nra++sg Zjn_sc00001.1.g06500.1.am.mk 497 LPPGFRFHPTDEELVVHYLKKKAASMPLPV-TIIAEVDLYKFDPWELPAKASFGEHEWFFFSPRDRKYPNGARPNRAATSG 576 79**************************.89***********9989999********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Zjn_sc00001.1.g06500.1.am.mk 577 YWKATGTDKPIFASggSREKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 625 *********9777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-62	493	664	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	497	664	IPR003441	NAC domain
Pfam	PF02365	6.4E-27	498	625	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MAGLTDVLIL ATGLVIYLLT SHSVCVDTWT AKLAAVKPHL GEACSLRGTP ATELQKFLAP 60 TVFPRPHQPS IRINSVPFIR RRRRRVPLPA RSTNAFNPCP ALGMHGRRPS PPPRARARPV 120 KAFDEPSNAP RLNSNKIARS FGDGTPPRCA SPSIAMVPRP RLDRFLNYGG AVVNRARGEA 180 ATQLRLFGAA EPQNFRSLSC PWRAFRSGPY QHPTCMAMSP VWFCSWVACV YMGAGGSKTS 240 AADRPSKCAS SPTLLHLGQP HAPQHCLGHP QGRSSVGFEL PTRLRLTLDR IQLSAPCACY 300 RLPMPVATSP VSYRCWASVP SDQRSRRTLL LEPAAAPCLS AQGGPSMESP DGRRIRGSFF 360 CRRRLKQGIR ATAAGRAGDK CAPVRGALGR GRWLADTPYG GSLRTCRAAR GPDRLATCLL 420 ASISGWLSFV VGAKGPETST KNPSTDHSPA CAALPLLLTD TATNLGLFAR TRSMESTDSS 480 SGSAPPQRKQ PGPAPHLPPG FRFHPTDEEL VVHYLKKKAA SMPLPVTIIA EVDLYKFDPW 540 ELPAKASFGE HEWFFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPIFAS GGSREKVGVK 600 KALVFYRGKP PKGIKTNWIM HEYRLADAAS SVNTSRPPPG SGGGGKAAAS LRLDDWVLCR 660 IYKKVNKYGV GEHLQRSMDG GEDCVEDAVG AYRLSHAATG DMAIASGGEN YTKLLHHNGN 720 NFLDGLLTVD DGSLTAGASS LNHLAAVATA SPAVTKQLLA PPGSTPFNWL DTSPIAILPP 780 AKTCHGFSRD TTDGGTSSLS SAAERNHLAV PGSSAGDIGA SSGGAVAVPT LLNQFGMQQG 840 AAYLHHHASF LGTSMPPETT SCAFQNPYQP AGVNWNP

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MAGLTDVLIL ATGLVIYLLT SHSVCVDTWT AKLAAVKPHL GEACSLRGTP ATELQKFLAP  60
TVFPRPHQPS IRINSVPFIR RRRRRVPLPA RSTNAFNPCP ALGMHGRRPS PPPRARARPV  120
KAFDEPSNAP RLNSNKIARS FGDGTPPRCA SPSIAMVPRP RLDRFLNYGG AVVNRARGEA  180
ATQLRLFGAA EPQNFRSLSC PWRAFRSGPY QHPTCMAMSP VWFCSWVACV YMGAGGSKTS  240
AADRPSKCAS SPTLLHLGQP HAPQHCLGHP QGRSSVGFEL PTRLRLTLDR IQLSAPCACY  300
RLPMPVATSP VSYRCWASVP SDQRSRRTLL LEPAAAPCLS AQGGPSMESP DGRRIRGSFF  360
CRRRLKQGIR ATAAGRAGDK CAPVRGALGR GRWLADTPYG GSLRTCRAAR GPDRLATCLL  420
ASISGWLSFV VGAKGPETST KNPSTDHSPA CAALPLLLTD TATNLGLFAR TRSMESTDSS  480
SGSAPPQRKQ PGPAPHLPPG FRFHPTDEEL VVHYLKKKAA SMPLPVTIIA EVDLYKFDPW  540
ELPAKASFGE HEWFFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPIFAS GGSREKVGVK  600
KALVFYRGKP PKGIKTNWIM HEYRLADAAS SVNTSRPPPG SGGGGKAAAS LRLDDWVLCR  660
IYKKVNKYGV GEHLQRSMDG GEDCVEDAVG AYRLSHAATG DMAIASGGEN YTKLLHHNGN  720
NFLDGLLTVD DGSLTAGASS LNHLAAVATA SPAVTKQLLA PPGSTPFNWL DTSPIAILPP  780
AKTCHGFSRD TTDGGTSSLS SAAERNHLAV PGSSAGDIGA SSGGAVAVPT LLNQFGMQQG  840
AAYLHHHASF LGTSMPPETT SCAFQNPYQP AGVNWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-66	487	664	10	168	NAC domain-containing protein 19
3swm_B	1e-66	487	664	10	168	NAC domain-containing protein 19
3swm_C	1e-66	487	664	10	168	NAC domain-containing protein 19
3swm_D	1e-66	487	664	10	168	NAC domain-containing protein 19
3swp_A	1e-66	487	664	10	168	NAC domain-containing protein 19
3swp_B	1e-66	487	664	10	168	NAC domain-containing protein 19
3swp_C	1e-66	487	664	10	168	NAC domain-containing protein 19
3swp_D	1e-66	487	664	10	168	NAC domain-containing protein 19

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	RRRRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-86	NAC domain containing protein 25