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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00001.1.g04220.1.sm.mkhc |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
M-type_MADS |
Protein Properties |
Length: 106aa MW: 12229.1 Da PI: 9.8073 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00001.1.g04220.1.sm.mkhc | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.2 | 3.4e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk rqvtfskRrng+lKKA+E+SvLCdaeva+i+fs +gklyeyss
Zjn_sc00001.1.g04220.1.sm.mkhc 10 RIENKVHRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSAKGKLYEYSS 59
8***********************************************96 PP
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ430695 | 1e-86 | AJ430695.1 Zea mays mRNA for putative MADS-domain transcription factor (m28 gene). |
GenBank | BT033397 | 1e-86 | BT033397.1 Zea mays full-length cDNA clone ZM_BFb0049C14 mRNA, complete cds. |
GenBank | BT065179 | 1e-86 | BT065179.1 Zea mays full-length cDNA clone ZM_BFb0021C02 mRNA, complete cds. |
GenBank | BT088075 | 1e-86 | BT088075.1 Zea mays full-length cDNA clone ZM_BFc0004L03 mRNA, complete cds. |
GenBank | EU962906 | 1e-86 | EU962906.1 Zea mays clone 246416 MADS-box transcription factor 18 mRNA, complete cds. |
GenBank | KJ727572 | 1e-86 | KJ727572.1 Zea mays clone pUT5432 MADS transcription factor (MADS67) mRNA, partial cds. |
Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes. Plant Sci., 2000. 155(2): p. 115-122 [PMID:10814814] - Chen C, et al.
Adapting rice anther culture to gene transformation and RNA interference. Sci. China, C, Life Sci., 2006. 49(5): p. 414-28 [PMID:17172048] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice. Plant Biotechnol. J., 2007. 5(6): p. 835-46 [PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development. Plant Cell Physiol., 2008. 49(5): p. 853-7 [PMID:18378529] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer. Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604 [PMID:20888318] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell, 2012. 24(5): p. 1848-59 [PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice. Plant Cell Rep., 2013. 32(9): p. 1455-63 [PMID:23689259] - Wang H, et al.
OsMADS32 interacts with PI-like proteins and regulates rice flower development. J Integr Plant Biol, 2015. 57(5): p. 504-13 [PMID:25081486] - Lombardo F, et al.
The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice. Plant Biotechnol. J., 2017. 15(1): p. 97-106 [PMID:27336225]
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