PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g03000.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28043.6 Da PI: 7.0724 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.1e-07 | 38 | 86 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +++ ++erE+r Rd+ N+ f+eL ++l ++ + + Ka iL +++ +k+ Zjn_sc00001.1.g03000.1.sm.mkhc 38 KKVHKSEREKRKRDKQNDLFDELGKMLEPD----RQNNGKACILSDTTRIVKD 86 678899*********************997....4667777788777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-10 | 35 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-7 | 35 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.693 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-5 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.19E-4 | 40 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVPRDKAHDG ADAAHPAPPE TLVQGPILNK KCEKKVPKKV HKSEREKRKR DKQNDLFDEL 60 GKMLEPDRQN NGKACILSDT TRIVKDLFSQ VALERNELFD ENNLIRNDIL GLKNELRMRL 120 EGSPIWTHGT ARSNLLLPHP GTQVFALQHS PHTPVIATMA LPQQQSAVLD PSYAAPRREL 180 QLFPETTATE DNERRPQDQG ISNHVTRPQA RYPTTTVTLP GHVYPVLPRM EDEHCSNGTT 240 GSGEEDGPGN A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804247.1 | 1e-131 | transcription factor BHLH062-like | ||||
Refseq | XP_025804248.1 | 1e-131 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 3e-96 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A2S3H2P0 | 1e-129 | A0A2S3H2P0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00364.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 7e-13 | bHLH family protein |
Publications ? help Back to Top | |||
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