PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g00880.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 919aa MW: 101794 Da PI: 6.5659 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 6.9e-19 | 318 | 417 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L+ Zjn_sc00001.1.g00880.1.sm.mkhc 318 FEKVLSASDAGRIGRLVLPKACAEAYlpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQ 395 99**************************555567778***************9989999999***9.************ PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+v+F++++ +++lv+++++ Zjn_sc00001.1.g00880.1.sm.mkhc 396 AGDTVTFSRIE-PGGKLVMGFRK 417 ********887.77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-31 | 310 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-21 | 315 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.36E-24 | 316 | 417 | No hit | No description |
SMART | SM01019 | 3.5E-22 | 318 | 418 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 318 | 419 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 318 | 417 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.685 | 579 | 629 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.7E-11 | 584 | 626 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MNVTYCFVSE SNRSWHTSSL SFVTSFIKRN QAGETARFVG SVSIVDVSHR RTLTIYLMAE 60 EFNGSGQVVP KLFPSQRNLQ IFGKSEELLP GRKFVQSPPI TVDSINDDIT IISKNNRPFI 120 VRNIEVGQSS SILRQKEIEN GSRQIKWEPA TLNIGDMGRM PFLTRTQSAL ESPHGVQRDD 180 SKDPITESTT NRSLSEARLS MTLGIANNGS KMEATSPVDR HMLSPTTVIA EGRELTTSLL 240 SPFQNAQRAR HFLTRPPRVS EDAAFDPTKD VFSHLRVARP PTEGRGRNQL LPRYWPRITD 300 QELQQISGDS NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYLPPISQP EGRPLTIQDA 360 RGKEWHFQFR FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN 420 TVSLPDSQIS AIANGSLLSE TLFSSANENL PVVSGYPGFL QSIKGAADLH PSSLYDHHVH 480 SADGDVSWPK TDKLGSRLDE GSLPFLQKKS RNIGSKSRRF LMDAEDALEL KLTWEEAQEL 540 LRPAPTSKPT FVTIEDYEFE EYDEPPVFAK RSIFTIRATG EQDQWIQCDD CSKWRRLPLN 600 VIVVSKWTCT DNSWDTKSCS CSAPEELTTK ELQSVLQQYE EMRRRKGISY GMKLNVAEMD 660 GTSLDALATA TVYGEIGNQG STSVATTTKH PRHRPGCTCI VCIQPPSGKG PKHSPSCTCN 720 VCMTVKRRFK TLMMRKKQRQ SERDEAEASK KIQWASRDET EGSSLTRSPQ TLDTTRDSDV 780 TMSDKQAADM SKGHIDLNFH PAVREDQEQH GSQPRPASMM GLLEVATRPL DNYMKQNGLT 840 CLGGGEQGGS PSTATVPPAP VESEERASNE NLEREREREP DAMTVDEASE DQQDKAAADD 900 SAPPPPPPPP PPAAAAAAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 8e-67 | 296 | 420 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 9e-67 | 296 | 420 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 725 | 736 | KRRFKTLMMRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958699.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | K3ZQF4 | 0.0 | K3ZQF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba00225.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-170 | HSI2-like 1 |
Publications ? help Back to Top | |||
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