PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016652760.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 182aa MW: 21533.4 Da PI: 7.5645

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016652760.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	110	133	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H XP_016652760.1 110 WQCGYCKKSFRAEKFLDQHFDNrH 133 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	112	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKNTSLFIPI LLLLSFSLQQ TVQVSSFTQR NQEFEKSASS RTLEQEHEHA HEVHCSRERS 60 RAAWKIIEEY LMPFLEQEHY EMSSKCRLHP DNDLFRDQEQ HKIHLDINEW QCGYCKKSFR 120 AEKFLDQHFD NRHYNLLNIS GSKCLADLCR ALHCDVVMDT KLSKTKCNPA AAARNHHLWS 180 CR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016652760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652760.1	1e-134	PREDICTED: uncharacterized protein LOC103344198 isoform X2
TrEMBL	A0A251P909	1e-117	A0A251P909_PRUPE; Uncharacterized protein
TrEMBL	A0A251P922	1e-117	A0A251P922_PRUPE; Uncharacterized protein
STRING	XP_008239409.1	1e-129	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	8e-71	C2H2-like zinc finger protein