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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 490aa MW: 55005.8 Da PI: 7.2664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 308 | 355 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ XP_016652557.1 308 STHVKAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355 68*************************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.7E-42 | 22 | 218 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.656 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-17 | 308 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 308 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-16 | 308 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.87E-13 | 308 | 359 | No hit | No description |
SMART | SM00353 | 1.7E-14 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MEDIISPCSS PNFCHENSAT FQQRLQFIVQ NRPEWWAYSI FWQASKDSND QVVLSWAGGH 60 FKSSRDFAFK RSNKMTNNYQ PKFGFSNVER KKVNNREVEV LFDEEDMVDL DMSLVDHGVG 120 DVTDSEWFYF YTVSLTQSFA AGHGNNSILG RAFCSGGFVW LAGDHELQFY ECERVKEARM 180 HGIQTLVCVA TPCGVLELAS LYVIKEDWGL VQLSKSLFES DNNRVSKQGS HDGNVLVSLL 240 ENEMFSGGQK DLTRQECGVK EATPVNIGGS SSDSPSDSVG NFTSANAKNI RLKKRGRSSN 300 HGTGKESSTH VKAERQRREK LNHRFYVLRS VVPNVSKMDR SSLLADAVAY INQLKEKVEE 360 LEAKIQAQTQ NPKVGHVSNL DHYHHHSSQS TGSIVDHRSS SYNINKAGAA LEVDVKILGS 420 EAMIRVQCPD QDYPYAKLMN ALKALGFQVY HASISSVKEL MIQDVVARVP YGFNSEKAVK 480 MGIIKIWYIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-25 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-25 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-25 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-25 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 297 | LKKRGRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652557.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652557.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A251P7Q5 | 0.0 | A0A251P7Q5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245388.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 4e-61 | bHLH family protein |