PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 34111.7 Da PI: 8.498 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.3e-11 | 150 | 197 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ +++L XP_016652303.1 150 SKACREKLRRDRLNDKFLELGSILEPG---RPPKTDKAAILVDAVRMVNQL 197 5678**********************8...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.294 | 146 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-8 | 149 | 202 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 150 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-9 | 150 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-13 | 151 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-9 | 152 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTKHTRKTHT TSCHQSPHHH QAHRFPLSLI PSEPTNPQTA TPFNCPLFGS EDITNSQPEN 60 PSFCLFRQRP NMVSPENTNW LFDYGLIDDT PVLDGNFPVS SSGFTWPVQP LAGSSSVSVE 120 IDGSLGDAEG VKESGSKKRV RTESCSGSSS KACREKLRRD RLNDKFLELG SILEPGRPPK 180 TDKAAILVDA VRMVNQLRGE AQKLKDSNSS LQEKIKELKA EKNELRDEKQ RLTLEKEKLE 240 QQLKARNTXX XXXXXXXXXP AAFAAQGQAH GNKLVPFIGY PGVAMWQFMP PASVDTSQDH 300 VLRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652303.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689422 | 0.0 | KP689422.1 Prunus pseudocerasus isolate Unigene14053 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652303.1 | 0.0 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-110 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M5WHW1 | 0.0 | M5WHW1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244399.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-92 | bHLH family protein |