PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651429.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 356aa    MW: 39718.6 Da    PI: 8.078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651429.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.7e-051952341255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  XP_016651429.1 195 RREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 234
                     9*****************9....55599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.31E-7168238No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13171248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-11194249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0021194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAFSYHPAF LLDSIFLPYT PNNINIDDHF PPSYPSEPLI QEVHNTDSRA VESSCTVDHS  60
SAKVSLSDNE PSVTKKQSTE SSTVVDKLET GEQVTQKVTS MDKKRKNRNG SSLNSAQSKA  120
SREHKGKKQK KLDGAEKAEE KKAKSDKKDQ VKVGDEPPTG YIHVRARRGQ ATDSHSLAER  180
VLKKIQSLSF SWNVRREKIS ERMKMLQRLV PGCDKVTGRA VMLDEIINYV QSLQNQVEFL  240
SMKLASVNPL FYDLGMDLGA LMVKPERLSS MASPYPSVPQ CSPTQPTAFA DTSTNITTFS  300
TANNYPFLDG SASILLQQGQ RLNDFSQDSE SLMWDVEDQR QNFLNPSGFG NNFQLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408784e-52EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651429.10.0PREDICTED: transcription factor bHLH137 isoform X1
TrEMBLM5WMI50.0M5WMI5_PRUPE; Uncharacterized protein
STRINGEMJ104830.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-53bHLH family protein