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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 465aa MW: 50940.8 Da PI: 6.9486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_016651370.1 59 REKWTEEEHHKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.57E-16 | 53 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.946 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-9 | 56 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.0E-16 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-11 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.24E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MAVEDYSEAT GSNASVAAAD CSLKGDAQSK PVIELKEISS FGNDHTPKIR KPYTITKQRE 60 KWTEEEHHKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVSKE SSGPSEGSIT 120 PIEIPPPRPK RKPVHPYPRK SVDSLIGSPE RSPSPHFSVS GKGQESPTSV LSALGSDVLG 180 SAALDQPSRS ATPTSCTTDM RSTILSHVEK ENDYMTSNSS TEEVKESVPS VQLSADSTPE 240 KFACMKHGSG SNHIVGTEGD AGSPRASPSI KLFGRTVLVS DLDRQSPPGS VTKDSKAKQE 300 NCQRENDKLA QTLRLDELDT RLSLGGIVEH QKQSPNSQKV NPDAPPPWWF MHDGLIPFFQ 360 VRSCNQNSVQ IHANSCADET MKETETSLSH DGSVSAVEIL AEKHLEAVEI LAEKHLEAAD 420 ALREETQSLP CSSRKGFAPY KRCLADRNMN SSGEMRDRQR ARVCS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240374.1 | 0.0 | PREDICTED: protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_008240375.1 | 0.0 | PREDICTED: protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_008240376.1 | 0.0 | PREDICTED: protein REVEILLE 7-like isoform X1 | ||||
Refseq | XP_016651370.1 | 0.0 | PREDICTED: protein REVEILLE 7-like isoform X1 | ||||
TrEMBL | A0A251PEQ0 | 0.0 | A0A251PEQ0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240374.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 1e-51 | MYB_related family protein |