PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651308.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 329aa    MW: 37615.6 Da    PI: 10.2772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651308.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05129150223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  Cg++F +++ L +H + H
  XP_016651308.1 129 VCRVCGRRFYTNEKLLNHFKIH 150
                     6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.42E-5128154No hitNo description
PROSITE profilePS5015710.824128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
CDDcd061671.29E-10193280No hitNo description
PfamPF019363.1E-6197281IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.9E-4217279IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLKHLKFPPI FCTVQSKRLE TLNPLTLLIR YFHFQSKLGF NSSSPSLCLA PQKIVENSVA  60
IFWDLDTKPP KSVSPYEAAV KLKMAASSFG LVRHMIAYAN QHALNYVPQV VRERKERNRV  120
VIRDGELNVC RVCGRRFYTN EKLLNHFKIH EREHAKRLNQ IESARGSRRV KLVGKYSMKM  180
EKYKNGARDV LTPKAGRGLA DEVKRAGFWV RSVVDNPQRV DAALRNHIVD MMDHKRAECL  240
MLVSDDSDFV DVVMEAKLRC LKTVVVGDFG DGALKRAADS GFSWNEILIG KAKKEAVSVV  300
GKWKDRDVLK RLEWTYKPDE EQSVNGWDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651308.10.0PREDICTED: uncharacterized protein LOC103337313
TrEMBLA0A314UIG30.0A0A314UIG3_PRUYE; Uncharacterized protein
STRINGEMJ104770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-106C2H2 family protein