PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651277.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 577aa MW: 63285.3 Da PI: 8.156

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651277.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8.4e-18	272	321	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_016651277.1 272 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 321 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.0E-24	267	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-19	269	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	270	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-15	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-15	272	324	No hit	No description
SMART	SM00353	1.5E-13	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA 60 KEETSVEIST AEKPASHAAA SAAAQPTSSV EHVLPGGIGT YTISHISYFN QRVPKPEGSP 120 VFTVTQAQAS STDRNVEEHS NCSSYTGSGF TLWEESALKN KGKTGKENLG ERPVGIVRGQ 180 WTSSERPAQS SSNNHRNCFS AQSSGQKNIS FMEMMKSAAK GSTQEDELDD EEEFVLKKET 240 STTTTTATTP YKGDLRVKVD VKSSDQKANT PRSKHSATEQ RRRSKINDRF QMLRELIPHS 300 DQKRDKASFL LEVIEYIQFL QEKVDKYEGS YQGWNPDPAK LMPWQRNNPK LRESYCDQSR 360 GMNGGSGTAL VFAAKFDEKT TSVSPSIPGS CAQNPVESDT STETTFKAMD HHPGITSKPM 420 PFPLSMQPNF FTPVGSGGAA VPQLPPRLPS DAENTSQHQS MLCHTVSRAT DGAAARDKLK 480 EQELTIEDGR INISSAYSQG LLNTLTQALQ NSGVDLSQAS ISVQIELGKR GNSRSPIPKS 540 VVKDNEILSS NQGKRHSRVA SGEDSEHAPK KLKTGRN

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA  60
KEETSVEIST AEKPASHAAA SAAAQPTSSV EHVLPGGIGT YTISHISYFN QRVPKPEGSP  120
VFTVTQAQAS STDRNVEEHS NCSSYTGSGF TLWEESALKN KGKTGKENLG ERPVGIVRGQ  180
WTSSERPAQS SSNNHRNCFS AQSSGQKNIS FMEMMKSAAK GSTQEDELDD EEEFVLKKET  240
STTTTTATTP YKGDLRVKVD VKSSDQKANT PRSKHSATEQ RRRSKINDRF QMLRELIPHS  300
DQKRDKASFL LEVIEYIQFL QEKVDKYEGS YQGWNPDPAK LMPWQRNNPK LRESYCDQSR  360
GMNGGSGTAL VFAAKFDEKT TSVSPSIPGS CAQNPVESDT STETTFKAMD HHPGITSKPM  420
PFPLSMQPNF FTPVGSGGAA VPQLPPRLPS DAENTSQHQS MLCHTVSRAT DGAAARDKLK  480
EQELTIEDGR INISSAYSQG LLNTLTQALQ NSGVDLSQAS ISVQIELGKR GNSRSPIPKS  540
VVKDNEILSS NQGKRHSRVA SGEDSEHAPK KLKTGRN

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651277.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240068.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
Refseq	XP_016651277.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-139	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A251PBM0	0.0	A0A251PBM0_PRUPE; Uncharacterized protein
STRING	XP_008240068.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-138	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]