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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016650699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 709aa MW: 80328.2 Da PI: 5.8835 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.7 | 5.8e-115 | 336 | 707 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++cA+av+s d + a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y+ l + + s +e l+a+++++ sP+ ++s++ XP_016650699.1 336 STLLTQCAQAVASYDRRTASELLKQIRQHSSPYGDATQRLAHYFADGLEARLAGARTPSYSPLVSMQIS---AAEILKAHEVYVTSSPFKNMSNF 427 579***************************************************999999999999998...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN++Il+ +e+++r+H+iDf+is+G+QWp++++ L++R +gpp+lRiT+++ p++g +e++eetg+rL+k+Ae+++vpfe+nv +a+++e++ XP_016650699.1 428 MANSTILKLAEKATRLHVIDFGISYGFQWPCFIHRLSERLGGPPMLRITAIELPQPGfrPTERVEETGRRLKKYAERFNVPFEYNV-IAQKWETI 521 ********************************************************9****************************9.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+++Vn++ +l++++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf eal ++salfd++ea++p+e+e r XP_016650699.1 522 QFEDLKIDRNEVIVVNCMNRLKHIPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFREALFHFSALFDMFEASVPHEDERRLL 616 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++ gr+i nvvaceg er+er et+++W+ r +aGFk++pl+++ k +k++l+ ++ + ++++e+ +++++gWk+r ++S+W+ XP_016650699.1 617 FEKAQYGRDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQELLKRVKRMLKFMGyHNDFSIDEDGHWMLQGWKGRITRALSFWK 707 **********************************************************9999999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.701 | 309 | 686 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-112 | 336 | 707 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MDTLLERYSL SMERFNFGHG SASLYSNQNL VNGFHVNQES TSPVLLSTNL DHPSDSSTSL 60 SSGSDGDTID FSDYNHPVLK YVSDILLEED LEGKTCMLQD CLALQAAEKS FYDVLNQEDP 120 PSPNQLPLSV HQSFENSDDD SPHSCHRSNG SIAAKTDWVF DPSETSNAQS SLVQSLSDAG 180 LVSDSLSEMH SLGHSGGLVE ASKFLPNVKL EGNRLMPPGL DQWPSSTNIL MTTPDNDGYN 240 STNELKGKKN HQREDADYPE EGRSNKQPVA FADDSEPQEM FDEVLLCHGN REFESCSPDE 300 SLISEGSGKL QRNKQKGSKT ARSKKQNNNW ELVDLSTLLT QCAQAVASYD RRTASELLKQ 360 IRQHSSPYGD ATQRLAHYFA DGLEARLAGA RTPSYSPLVS MQISAAEILK AHEVYVTSSP 420 FKNMSNFMAN STILKLAEKA TRLHVIDFGI SYGFQWPCFI HRLSERLGGP PMLRITAIEL 480 PQPGFRPTER VEETGRRLKK YAERFNVPFE YNVIAQKWET IQFEDLKIDR NEVIVVNCMN 540 RLKHIPDETV MVNSPRDIVL KLIKKINPDL FIHGVVNGTY NSPFFVTRFR EALFHFSALF 600 DMFEASVPHE DERRLLFEKA QYGRDILNVV ACEGLERVER PETYKQWQVR NVRAGFKQLP 660 LDQELLKRVK RMLKFMGYHN DFSIDEDGHW MLQGWKGRIT RALSFWKKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-45 | 317 | 706 | 1 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016650699.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016650699.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M5WFN1 | 0.0 | M5WFN1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223833.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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