PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650411.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 603aa    MW: 68199.2 Da    PI: 4.7381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650411.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13359402755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N++++ Lr l+P+ +      Kl+ a+iL  A+eY+++Lq
  XP_016650411.1 359 VAERKRRKKLNERLFALRALVPNiS------KLDRASILGDAIEYVQELQ 402
                     68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-185151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.012352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-13354404No hitNo description
SuperFamilySSF474596.94E-17356415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-16358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17359415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10359402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPSLIQRLRS LVGLKGWDYC VIWKLSEDQR FIEWMDCCCS GTEITQYDAG QDLLFPPVLP  60
CRDTMLQHPR TTACDLLAKM PSSLPLDSGI YAETLISNQP SWLNFSNNTC LSTLEETVGT  120
KVLIPIPGGL IELLVTKQKV FEDQHVIDFI TAQYSISMEQ DTLDNITGTS IMSEIESKNL  180
LDNGNDQMDI NNVHFQPPLS SRICSKLDNL NLPYDVSMGT ISNSPIKFLQ QFTNYNLGNR  240
TKSSIDVSYG DSSHEPFLSD KQMDPFICTA ENGFQEMEAM QRSMMADETQ QHMHMQYMEA  300
LAPDMDQQDG NDKQDSILHD EGPAADGLSD CSDQIDDDED DAKYQRRRAG KVPQAKNLVA  360
ERKRRKKLNE RLFALRALVP NISKLDRASI LGDAIEYVQE LQKQAKQLQD ELDDHAEDEG  420
PKNSGITGHH NNIQSEIQSG LDPGGPKTDH QHDSVSKQSQ DSDVIHDHKT QQMEPQVEVA  480
QLDGNQFFVK VFCEHKPGGF VRLMEALSSL SLEVINANVT SFRCLVSNVF VVERKDSEMV  540
EADDVRDSLL ELTRNPSRWR SEIAKAAENG VSFDNHDHDH HHHLHLHNRH INPFHLHHLP  600
NET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13350411263Transcription factor MYC2
5gnj_B1e-13350411263Transcription factor MYC2
5gnj_E1e-13350411263Transcription factor MYC2
5gnj_F1e-13350411263Transcription factor MYC2
5gnj_G1e-13350411263Transcription factor MYC2
5gnj_I1e-13350411263Transcription factor MYC2
5gnj_M1e-13350411263Transcription factor MYC2
5gnj_N1e-13350411263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345366RRRAGKVPQAKNLVAERKRRKK
2360367ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650411.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLM5VNQ70.0M5VNQ7_PRUPE; Uncharacterized protein
STRINGEMJ028640.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-113bHLH family protein