PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650277.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 699aa    MW: 78916 Da    PI: 6.1943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650277.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08595643247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+++++d vk  ++      W+ I + ++ ++++ +++s+++++
   XP_016650277.1 595 LSWTAEEEKKFKDIVKSNPPSlgitFWDQIFKSFP-KKSRRELVSYYFNV 643
                      58*****************88**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010148.5E-844136No hitNo description
PROSITE profilePS5101116.33947140IPR001606ARID DNA-binding domain
SMARTSM005017.0E-1148141IPR001606ARID DNA-binding domain
SuperFamilySSF467744.19E-1550144IPR001606ARID DNA-binding domain
PfamPF013888.4E-967133IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.0E-1168142IPR001606ARID DNA-binding domain
SMARTSM011892.0E-6497548IPR000949ELM2 domain
SMARTSM007170.0029593646IPR001005SANT/Myb domain
PfamPF002497.1E-6596643IPR001005SANT/Myb domain
CDDcd001671.06E-5596644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MAGWSMVADG SALDCAKTPK KNETDGFSVD LEPQSEAPER CVLDVPHKLR CWFDQLLGVF  60
LKEISAQGLL RPLPPMIGNG QRVDLLKLFW VVRKRGGFDT ISKIRVWDSV AKECGLGWGL  120
GWAVKLVYVK YLHLLERVIE NKALEWSVDI SGLDLTEQFM DLEDKLTKVF PEISDQKVKD  180
GGYPHVELSP KNFKDSNEVG SEVAESDRLK KSVVSEAFLD LDSRRDAGNF CNGDVPLSGG  240
AMKCTVNLMN KNLDLTNSME DVGKVCDNGE VSEVGESGRG KKYNDCDEAV IFLDPSPGEV  300
SSFRKRKRGP SCGSEVGESR RGKKYNDISN EDAVILDPST DEEANSFWKR KQESLCGMLN  360
WVRVIAKDPC DPAVGSLPER SKWKSFGNEE NWMQVLCARE AIFVKKHADS GAEQSNWQKN  420
QRMHPSLYDD HFSSSYNLRE RLRLEKKLLS GGTMPQSRTG SESSSPSYSP DMAGMEDQLL  480
GTSDFTGVLD RYPPSHIPLG SNYQAHLPEW TGEASESELK WLGSRFWPLE KPEHRYLIER  540
DPIGKGRQES CGCQVSGSIE CVRFHISEKR LRVKLELGPA FYHWEFNQMG EEVGLSWTAE  600
EEKKFKDIVK SNPPSLGITF WDQIFKSFPK KSRRELVSYY FNVFLLHRRG YQNRFTPNNI  660
DSDDEGLESG SVTNGFGDEE RKPSKSILKS PHKPHAKCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650277.10.0PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A251QH940.0A0A251QH94_PRUPE; Uncharacterized protein
STRINGXP_008233024.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724