PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649753.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 592aa    MW: 65912.2 Da    PI: 9.3489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649753.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.7e-194894148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l++av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
   XP_016649753.1 48 KGGWTEEEDKILAHAVQKFNGRNWKKIAECVP-DRTDVQCLHRWQKVL 94
                     688*****************************.************986 PP
2Myb_DNA-binding56.65.8e-18100146148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l
   XP_016649753.1 100 KGFWSKEEDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 146
                      688*****************************.*************97 PP
3Myb_DNA-binding49.11.3e-15152194145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+ E++ l++a+k +G++ W+ Ia+ +  gR+++++k++w+
   XP_016649753.1 152 RTAWTKAEELTLIEAHKIYGNK-WAEIAKFLH-GRSENSIKNHWN 194
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9754394IPR017930Myb domain
SuperFamilySSF466891.93E-1646100IPR009057Homeodomain-like
SMARTSM007173.0E-164796IPR001005SANT/Myb domain
PfamPF002491.5E-174894IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2250107IPR009057Homeodomain-like
CDDcd001672.40E-145194No hitNo description
PROSITE profilePS5129430.17795150IPR017930Myb domain
SuperFamilySSF466899.52E-3097193IPR009057Homeodomain-like
SMARTSM007171.7E-1699148IPR001005SANT/Myb domain
PfamPF139211.8E-18103161No hitNo description
CDDcd001676.66E-15103146No hitNo description
Gene3DG3DSA:1.10.10.601.1E-25108154IPR009057Homeodomain-like
SMARTSM007172.7E-15151199IPR001005SANT/Myb domain
PROSITE profilePS5129420.323151201IPR017930Myb domain
CDDcd001671.88E-11154194No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21155201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVQVKEFDGN LKEEGLVSLS PSVSGSTCDN AVLNLASLMA GPIRRSTKGG WTEEEDKILA  60
HAVQKFNGRN WKKIAECVPD RTDVQCLHRW QKVLNPDLVK GFWSKEEDDL IIELVAKQGN  120
KKWSEIAKSL PGRIGKQCRE RWHNHLNPDI KRTAWTKAEE LTLIEAHKIY GNKWAEIAKF  180
LHGRSENSIK NHWNSSVKKK LELRSSHTSD MGTQNIKSES RKREVVKQGL DQKANMERNV  240
ETCSLDLNLV LGTANRRESQ MQSSDKGNCG WLTKGAAANK MMKTPPRTVF YDRAAAACGL  300
NIEQCQETSH NCGRLRDSHN VTANSHYNNI CNAAPDYLGF PFSHTQNHKP SDPIYLLPSR  360
PLPRPPQASL NAGLGVPGCK RTAGYFINKP VLPVTAQGLY ESSSGPQAYE KKKDGGAPVN  420
SKNSSHGRLC YRPFQLEDVE FYLENGEFPS TDSYIQTECS SVSFCTPTSH DTRIFVDCNS  480
PDSTLRSAAR TFEKSPSIIR KRRHSVSRKS VNAANHGDSV CSKEISNNSR NIPHLLGLSP  540
CGKTNSSSMV HSPPRTQKFG DSAVIKSVEK RLEHAFDVEW DSASAVSRTL SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-61482016159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-61482016159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934030.0KT893403.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor 3R-1 (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649753.10.0PREDICTED: uncharacterized protein LOC103331910
TrEMBLM5XNR50.0M5XNR5_PRUPE; Uncharacterized protein
STRINGXP_008232807.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.16e-84Homeodomain-like protein