PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649475.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARR-B | ||||||||
Protein Properties | Length: 551aa MW: 61278 Da PI: 6.6367 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.8e-27 | 308 | 362 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++ XP_016649475.1 308 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKAEGLTRHNVASHLQKYRMH 362 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 28.6 | 7.1e-11 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++++ + +++ le +y +v+++ + +eal + + +++ ++ ++ ++ G+ +++ +++++ +lp i+ + +++ +++ +G XP_016649475.1 20 VLLLDEDNSSAAEIKSKLEAMDY-IVTTFCNDTEALSAFSSNPqsFQVAIVEVNASN--GHGVFQFLETAK-DLPTIMTSNIHCLSTMMKCIALG 110 7999999****************.***************776666999999988765..666788888877.9****9999999*********** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_016649475.1 111 AVEFLRKPLSEDKLRN 126 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.57E-15 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.1E-16 | 16 | 165 | No hit | No description |
SMART | SM00448 | 0.0089 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 21.995 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.7E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.51E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.081 | 305 | 364 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 306 | 364 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.26E-18 | 307 | 365 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 308 | 363 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-9 | 311 | 360 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MVCTANDLQE WKDFPKGLKV LLLDEDNSSA AEIKSKLEAM DYIVTTFCND TEALSAFSSN 60 PQSFQVAIVE VNASNGHGVF QFLETAKDLP TIMTSNIHCL STMMKCIALG AVEFLRKPLS 120 EDKLRNIWQH VVHKAFNAGG SAISESLKPV KESVVSILQI KQETEEQKCK TSVETENVSR 180 VHESDREQSV GSDKYPAPST PQLKQGSRLL ADGDCQDQIN CLSEKESGEN DSESKSAETT 240 CGNPIDEGTV QMSEPQMTRK RVVKEENDSV NGSQHPHNRN SANDVGGAAE NLSKASAPNN 300 SCKSNRKKMK VDWTPELHKK FVQAVEQLGV DQAIPSRILE LMKAEGLTRH NVASHLQKYR 360 MHKRHILPKE DDRRLPHPRD PIQRSYYPQN QKPIMAFPPY HYNNSLSMAP VYPMWGQPGS 420 QPAGVQMWGS PGYPQWQPSE SWHWKPYQGM QADAWGCPVM PPLQGGYPSY PQNAAGFHAG 480 VVDNGCSMQH NSFDLHPAEE VVDKVVKEAI SKPWLPLPLG LKPPSTEGVL DELSRQGICN 540 IPPHINRSNT R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-16 | 313 | 362 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649475.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008229552.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_008229553.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_008229555.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_016649475.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 | ||||
Swissprot | Q6LA43 | 1e-148 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A314ZJ21 | 0.0 | A0A314ZJ21_PRUYE; Two-component response regulator-like APRR2 | ||||
STRING | XP_008229552.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-145 | ARR-B family protein |
Publications ? help Back to Top | |||
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