PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648888.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 662aa    MW: 72475.5 Da    PI: 6.3666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648888.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08549597348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_016648888.1 549 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 597
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869542601IPR017930Myb domain
SuperFamilySSF466891.3E-15544608IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-12544603IPR009057Homeodomain-like
SMARTSM007171.2E-8546599IPR001005SANT/Myb domain
CDDcd116601.44E-19548598No hitNo description
PfamPF002494.0E-6549597IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
METVVGVEGS DEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME  60
VEEFLVDEKI EIPVVTDAGN VECISNEESS SGKSHKESSE GPSHSENTEP DAKLSARLEY  120
IEEMLQKVKQ EEKLRLACGS PDHSSAFMNV DSQCSDQHDK LPAIDKKLQS EIPLQEIVPS  180
SDPSLDDSHI NESARIGECS KAPDGPIESG SPASVICNSS KPDFYTLKGE ICLDNLSIRE  240
LHGLFRATFG RETTVKDKLW LKRRIAMGLT NSCDVSTTTF TIIDNKLVNK GTDNSFQNAD  300
GMLTEGSDGE AKNLGYETSP TSHSSQMENH QIVLGKRLGN LSVELDCGSD DLQMEHRGAK  360
RVRKPTKRYI EELSEVESRD YTPKVIGSAK NTGQGQTSPK YCIRPPGNAP LNERTIVTRL  420
DSLGGSGVQV PFVSRVRRSR PRKNIMALMK FDSSGMGVAA KLVQEALSVR SSPPESEHVD  480
KVLKVRSASE QIQPLAEPEK DKRRSVMSTI ELGKNLGLKQ TDSSEDNSDD GIATVPTAKG  540
GMRRKHHRAW TLVEVIKLVE GVSKCGTGRW SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS  600
FAQTPPDDGI NSRKHASVPI PAAILLKVRE LAEMHAQVPP NLGPGKLPSV SRSVHQTRSG  660
YL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436442RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648888.10.0PREDICTED: uncharacterized protein LOC103327648
TrEMBLA0A251PV340.0A0A251PV34_PRUPE; Uncharacterized protein
STRINGXP_008228212.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-116TRF-like 6