PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648489.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 320aa MW: 36878.1 Da PI: 7.3716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648489.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.8e-51	22	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLpk++++ +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+ XP_016648489.1 22 LPGFRFHPTDEELVEFYLRRKVEKKAISI-ELIKSIDIYKHDPWDLPKAISTsGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIHSH 115 59*************************.89***********655442788**********************************8 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLv+y+g+a kg+ktdW+mhe+rl XP_016648489.1 116 ggqGHACIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 151 5544445*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.103	21	190	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-54	21	190	IPR003441	NAC domain
Pfam	PF02365	1.4E-26	23	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDSNYTSTKD DHQYIDEDDV QLPGFRFHPT DEELVEFYLR RKVEKKAISI ELIKSIDIYK 60 HDPWDLPKAI STSGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK PIHSHGGQGH 120 ACIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPNPAGSNEY IHRSSNTKNI NSTDPQQEAE 180 IWTLCRIFKR NVSYKKADWR GQSGAKRHPM DTVSSKKCTS DQDDLDQSNN YISFGASDNI 240 ICYEEKKPVV NHTNMNNFNG SNQQLHAVGQ LSSNMPATYP YMETFSNFSY QDLENELLNE 300 NWDELRSAAV HLAFDPTFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	12	196	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	12	196	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	12	196	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	12	196	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-49	12	196	3	171	NAC domain-containing protein 19
4dul_B	2e-49	12	196	3	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648489.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648489.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	8e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A314Z6S3	0.0	A0A314Z6S3_PRUYE; Transcription factor JUNGBRUNNEN 1
STRING	XP_008226178.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-83	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]