PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648404.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 649aa MW: 75131.1 Da PI: 5.8723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648404.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.6e-21	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_016648404.1 69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 160 59******************8888.***************************************99867789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	69	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-18	293	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	521	556	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-6	525	554	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.4E-4	531	558	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSITSQ LVKNDSAGSE AMVSPYVGMV 60 FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR 120 DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE 180 RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE 240 NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ 300 SITYGVLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR CPQTILTDLD 360 PGLRDAIRSE LPGTKHVVSI WNILPKVSSW FSVSLGSRCA EFKSEFDVLC RVESTEDFEL 420 QWNQMISMFG LTTDKHIALL YSFRASWALS YMKGYFLACM ATTAYSKSVD AFLKGVFSAQ 480 TCLRSFFEQH ELVLAMQYAV SEMSNGSYLV RHFKEIDGER LVIWIPEEEQ IHCSCKEFES 540 SGLLCRHSLR VFVVKNYFQL PDKYYLNRWR KESSLDFYDD HITRTSDDEW FQDYHCLTET 600 LFTESSITKE RADYVRRELT TQLTRILNEV RNMPECEGVA MDLTFSPTG

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSITSQ LVKNDSAGSE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ  300
SITYGVLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR CPQTILTDLD  360
PGLRDAIRSE LPGTKHVVSI WNILPKVSSW FSVSLGSRCA EFKSEFDVLC RVESTEDFEL  420
QWNQMISMFG LTTDKHIALL YSFRASWALS YMKGYFLACM ATTAYSKSVD AFLKGVFSAQ  480
TCLRSFFEQH ELVLAMQYAV SEMSNGSYLV RHFKEIDGER LVIWIPEEEQ IHCSCKEFES  540
SGLLCRHSLR VFVVKNYFQL PDKYYLNRWR KESSLDFYDD HITRTSDDEW FQDYHCLTET  600
LFTESSITKE RADYVRRELT TQLTRILNEV RNMPECEGVA MDLTFSPTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648404.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A251PDR5	0.0	A0A251PDR5_PRUPE; Uncharacterized protein
STRING	XP_008227430.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]