PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648296.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 393aa MW: 43015.5 Da PI: 7.5731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648296.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	359	381	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ +L H++ H XP_016648296.1 359 YTCKICKREFPNYNSLGGHMSFH 381 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.52E-5	358	385	No hit	No description
PROSITE profile	PS50157	10.388	359	386	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.8E-6	359	381	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	361	381	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDGRQDNAIQ PFDEAWFDVA NPCGKEFELP NASSPIHPRW SDNSNNLVFL QDQQLRTPDI 60 LENSYELETI RSSCAGNQVD SCPIMEMGPS IANFVPIVNP QEGTSIGNHK VHFPRSTGVL 120 KSEFEGVFPE VNQHVYAPTS ASYSWKGVDI NFPLRNQESH AVNSTNSPSI SSTESLCLKN 180 NPTHAPRFPN TSGFGPSVYI PPNKQLTHFR TSSNAFRLNS DDYIINDHVC SGFHFTILGL 240 ISSSGSSSSF GSSGCHPVRN QEIRSSSFTD SPSIQNGLSV RSNQVAYKFP GSANGDINHG 300 PSHLQAVSHG TGITSNVPVP VENQVETSTR APQSNCRGSE KNQTFGPSSS KNGRCDVKYT 360 CKICKREFPN YNSLGGHMSF HAKMKKAKRK LDS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDGRQDNAIQ PFDEAWFDVA NPCGKEFELP NASSPIHPRW SDNSNNLVFL QDQQLRTPDI  60
LENSYELETI RSSCAGNQVD SCPIMEMGPS IANFVPIVNP QEGTSIGNHK VHFPRSTGVL  120
KSEFEGVFPE VNQHVYAPTS ASYSWKGVDI NFPLRNQESH AVNSTNSPSI SSTESLCLKN  180
NPTHAPRFPN TSGFGPSVYI PPNKQLTHFR TSSNAFRLNS DDYIINDHVC SGFHFTILGL  240
ISSSGSSSSF GSSGCHPVRN QEIRSSSFTD SPSIQNGLSV RSNQVAYKFP GSANGDINHG  300
PSHLQAVSHG TGITSNVPVP VENQVETSTR APQSNCRGSE KNQTFGPSSS KNGRCDVKYT  360
CKICKREFPN YNSLGGHMSF HAKMKKAKRK LDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648296.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648296.1	0.0	PREDICTED: uncharacterized protein LOC107880715
TrEMBL	A0A251PS28	0.0	A0A251PS28_PRUPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21983	2	2