PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648096.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 525aa MW: 57677.1 Da PI: 8.2756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648096.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	91	111	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_016648096.1 91 CEICNKGFQREQNLQLHRRGH 111 *******************88 PP
2	zf-C2H2	12.4	0.00047	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_016648096.1 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	88	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.32E-7	88	111	No hit	No description
PROSITE profile	PS50157	10.949	89	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-4	153	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.32E-7	160	185	No hit	No description
SMART	SM00355	130	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK 60 KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR 120 TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS 240 LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ 300 YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP 360 PSHQAHVSNE AFDDGFGSND NKSSLLHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVDGN 420 NNFVEINNNN NNINPPKNYK SMELAQLGRS GTDNNNNDEG LTRDFLGLRA PFSSSAAAAA 480 AAASHGHGDF FNINMAGLNH HVNSSSSSAY NGQQSDHQNQ TSWQG

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK  60
KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR  120
TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW  180
KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS  240
LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ  300
YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP  360
PSHQAHVSNE AFDDGFGSND NKSSLLHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVDGN  420
NNFVEINNNN NNINPPKNYK SMELAQLGRS GTDNNNNDEG LTRDFLGLRA PFSSSAAAAA  480
AAASHGHGDF FNINMAGLNH HVNSSSSSAY NGQQSDHQNQ TSWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	161	221	3	63	Zinc finger protein JACKDAW
5b3h_F	1e-33	161	221	3	63	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648096.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648096.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_016648097.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A251RB29	0.0	A0A251RB29_PRUPE; Uncharacterized protein
STRING	XP_008220488.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]