PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016647975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 730aa MW: 83658.4 Da PI: 6.9405 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.6 | 1.3e-20 | 53 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel XP_016647975.1 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 146 6***************9998874556679*******************9*******************98887676789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-17 | 53 | 146 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-22 | 269 | 361 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.829 | 533 | 581 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-6 | 555 | 579 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-5 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ 180 MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF 240 KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG 300 CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDLPQS KHAFCIWHIV 360 AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VKDFEERWRE MVNEFGLHTN KHVISLYALR 420 NFWALAYLRH CFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ 480 KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE 540 EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCNVSSS 600 STNTFETATT MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIAMAL SRVKDLPRTT 660 HNAIDIAYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH 720 CSGPCCLSVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016647975.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008223294.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_016647975.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_016647976.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A251QZE3 | 0.0 | A0A251QZE3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223294.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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