PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016647971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 311aa MW: 35928.2 Da PI: 6.4438 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.5 | 7.7e-28 | 72 | 153 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e XP_016647971.1 72 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 153 ********************************************************************84...556899***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.571 | 64 | 128 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-5 | 65 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-5 | 68 | 130 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.65E-5 | 70 | 130 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 2.56E-29 | 70 | 135 | No hit | No description |
Pfam | PF13837 | 1.0E-21 | 71 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MYLSEKPRAI DFYKEEGSRD MMIEVVSNDD LSQSQTHHPN HQPQQQQQQM LLGDSSGEDH 60 EVKAPKKRAE TWVQDETRSL IALRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHHDRG SGSAKMSYYK EIEEILKERN KNAQYKSPTP PKVDSFMQFS 180 DKGIEDASIS FAPVEVPWCT ASGRPTLNLE RRLDHDGHPL AITAADAVTA SGVPPWNWRE 240 TPGNGVAIKV CLYDESDHIP VHTEEKIFYT EDDYRDFLTR RGWSCLREFD GYRNIENMDD 300 LRPGAIYRGV S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-53 | 66 | 151 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016647971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016647971.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X3 | ||||
Swissprot | Q9FX53 | 1e-118 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A251R291 | 1e-177 | A0A251R291_PRUPE; Uncharacterized protein | ||||
STRING | XP_008222025.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.2 | 1e-123 | Trihelix family protein |
Publications ? help Back to Top | |||
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