PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016647930.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 246aa MW: 28120.4 Da PI: 9.3034

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016647930.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.9	3.4e-28	45	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+Y+ +vGF +r+++ +sk++g+i+ rtfvC+keg+r++++++ +++ ++ra tr+gCka+l +kk + gkw+vt++ +eH+H+l+ XP_016647930.1 45 FYNAYGMRVGFMTRMNYLARSKHDGTIIGRTFVCNKEGYRKPDRRD-KTTIKPRAPTRVGCKAMLLIKKISIGKWVVTRFMKEHTHALT 132 *****************************************999.999**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	45	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSHLGQGQDD EVTQNPCKDG SSVVVEADEP YVGQEFDTEE TAQAFYNAYG MRVGFMTRMN 60 YLARSKHDGT IIGRTFVCNK EGYRKPDRRD KTTIKPRAPT RVGCKAMLLI KKISIGKWVV 120 TRFMKEHTHA LTATANKGQK GLIADQVPII NQIGQLESLD TLCICGIDMG MVKYVKFNWL 180 DGKRKIEELT RELFLERKRS ASLREIVDLL FDHIEEHSQD LSKKVQYVVG KVKEIESEGK 240 KRYNLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016647930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647930.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A315A5A0	1e-140	A0A315A5A0_PRUYE; Uncharacterized protein
STRING	XP_008218479.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-60	FAR1 family protein