PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647640.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 431aa    MW: 48533.8 Da    PI: 6.724
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647640.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073684012154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_016647640.1 368 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 401
                     469*****************************87 PP
2ELK28.82.8e-10322343122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_016647640.1 322 ELKHELKQGYKEKIVDIREEIL 343
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18157201IPR005540KNOX1
PfamPF037901.9E-16160200IPR005540KNOX1
SMARTSM012562.0E-29210265IPR005541KNOX2
PfamPF037911.3E-21214264IPR005541KNOX2
PROSITE profilePS512139.969322342IPR005539ELK domain
SMARTSM011886.1E-4322343IPR005539ELK domain
PfamPF037891.0E-6322343IPR005539ELK domain
PROSITE profilePS5007111.726342405IPR001356Homeobox domain
SuperFamilySSF466894.71E-16344407IPR009057Homeodomain-like
SMARTSM003894.7E-11344409IPR001356Homeobox domain
CDDcd000862.22E-11345406No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25349406IPR009057Homeodomain-like
PfamPF059201.2E-17362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAYHNHLSQQ DLPLHHFTDQ TQQQHQPFQS DQPDPNSKPT EPHHPFQPAP NWLNTALLRN  60
YTNADANNNH NNSPNNNGGG GASNFLNLHV TASDSTTSQA SNQWLSQPHR PILHRNHTHD  120
PXXXXXXXXX XXXNKTDIVV ESGGGGGDGG MINWQNARHK AEILAHPLYE PLLSAHVACL  180
RIATPVDQLP RIDAQLAQSQ NVVAKYSALG HGMVGDDKEL DQFMRHYVLL LCSFKEQLQQ  240
HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDE DDQVDSDANL FDGSMDGHDS  300
MGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK  360
AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS TVLKSKRKRS  420
NAGENSGDRF G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398418RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7867550.0DQ786755.1 Prunus persica class II knotted-like homeobox protein (Knope3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647640.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA6XHG40.0A6XHG4_PRUPE; Class II knotted-like homeobox protein
STRINGXP_008219701.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-179KNOTTED1-like homeobox gene 3