PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016647471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 207aa MW: 23691.3 Da PI: 4.856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.3 | 1.7e-37 | 8 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ e ++wyf+s+r +nr+t++gyWka g +++v+++ XP_016647471.1 8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELDGKALREGNKWYFYSRRT--------QNRVTSNGYWKALGVEEPVITR 93 79*************************999.99**************977677889******984........58******************99 PP NAM 96 ....kgelvglkktLvfykgrapk.gektdWvmheyrl 128 ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl XP_016647471.1 94 sscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 131 88877888**********997765289*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-45 | 5 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.821 | 8 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-24 | 9 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELDGKALRE 60 GNKWYFYSRR TQNRVTSNGY WKALGVEEPV ITRSSCNSTH KVGMKRYLAF YVGEAPNSGI 120 KTNWIMHEYR LSPLSAGDGP SSSSTTTRSS SKRRGHLKTV NNEFSGYVLC RVYERDEDDD 180 DDDGTELSCL DEVFLSLDDL DEISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-37 | 5 | 176 | 17 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016647471.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016647471.1 | 1e-154 | PREDICTED: NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 1e-73 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A314XRF3 | 1e-132 | A0A314XRF3_PRUYE; NAC domain-containing protein 104 isoform X1 | ||||
STRING | XP_008218880.1 | 1e-130 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-70 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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