PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647391.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 354aa    MW: 39950.8 Da    PI: 9.5096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647391.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16114197999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     d ++++ l++p  f+++++g      + t++ ++g+ W v+l  ++++++ ++ kGW +Fvk++ +++ Df++F +dg sef   v++++k
  XP_016647391.1 114 DDFSQH-LRIPPAFIKNFSGRR--LGKCTMRGPTGKCWAVEL--EQRRDGLFFHKGWPGFVKDHFIESEDFLIFDYDGGSEF--DVTIYDK 197
                     566666.********8887774..348***************..*********************************98998..8888876 PP
2B338.42.3e-122423291298
                     HTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ l +pk+ a +      +g+   + tl+l+d++grsW v+l  + + ++   +++GW+   + n++  gD+++F++++  ++  ++++fr
  XP_016647391.1 242 DLCSLLIPKSIAVTEglmssEGI-LIKETLMLQDRTGRSWLVQL--DVTCDGrLEMRRGWRTCQDTNQISHGDTIIFEFVK--QGVILLHIFR 329
                     357799****9988877665323.25679***************..665555499***********************765..6667888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-21103200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-21103200IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-15105196No hitNo description
SMARTSM010193.9E-10107198IPR003340B3 DNA binding domain
PfamPF023622.0E-13114196IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026120198IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-15227329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-15227329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335231331IPR003340B3 DNA binding domain
CDDcd100179.43E-8233329No hitNo description
SMARTSM010191.5E-5234331IPR003340B3 DNA binding domain
PfamPF023621.1E-9243330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNSIVMSRLQ TRRSRGYGFF KFQKAKAEGE ETSASQPQRT SRRSTSSEVV SHLKGNLGPS  60
TSSPGAEQSL VELGRVWWAP IYERLLIIHF RFQMDKKLKC PLERPSFRVF LVGDDFSQHL  120
RIPPAFIKNF SGRRLGKCTM RGPTGKCWAV ELEQRRDGLF FHKGWPGFVK DHFIESEDFL  180
IFDYDGGSEF DVTIYDKTCC EKDVKAAAKR LASDHLAETS TGGPILFKSE NACFTKTLKP  240
RDLCSLLIPK SIAVTEGLMS SEGILIKETL MLQDRTGRSW LVQLDVTCDG RLEMRRGWRT  300
CQDTNQISHG DTIIFEFVKQ GVILLHIFRG RGEGNSSSVV VLSGVLPRNS SQNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647391.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A251R9R51e-170A0A251R9R5_PRUPE; Uncharacterized protein
STRINGXP_008220725.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-17B3 family protein