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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 156aa MW: 17656.1 Da PI: 10.6309 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 4.9e-17 | 60 | 133 | 14 | 85 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 + +++p +fa+++g++ ++ + l+d+sgrsW + ++ + ++ r + +kGW +F +an+Lk gD+++F l+ XP_016646952.1 60 AYMTFPANFARSNGIVDTS--RIFLKDPSGRSWPLIISKWESKTRgsyrIATRKGWYKFYEANKLKHGDVCIFNLK 133 6799*********999766..7***************8855554445546777********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-18 | 39 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-18 | 40 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-16 | 45 | 138 | No hit | No description |
SMART | SM01019 | 1.8E-9 | 46 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 47 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-14 | 60 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MVFNVVAYES LGSEKEYELQ SDKHQHDYKG KRTLKGTASS SSRTLFSTMM SKTHGDPLRA 60 YMTFPANFAR SNGIVDTSRI FLKDPSGRSW PLIISKWESK TRGSYRIATR KGWYKFYEAN 120 KLKHGDVCIF NLKPVSSKSG SKSTRVLEVQ ITRGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646952.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016646952.1 | 1e-113 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A251RGD5 | 1e-102 | A0A251RGD5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220723.1 | 1e-53 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-10 | B3 family protein |