PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016646887.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 339aa    MW: 38208.6 Da    PI: 5.5813
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016646887.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.82.6e-2743136186
        trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rWt+qe+l+Li+++r+ e+r + +         +++p+W++vs +++++g++r+p+qC+++w+nl++++kki+e+e +r++e++s +++ ++l+
  XP_016646887.1  43 RWTRQEILVLINGKRYAESRGGGRTprsdfgsgQAEPKWAAVSTYCKKHGVNRGPVQCRKRWSNLAGDFKKIREWEVQRKDETESFWVMRNDLR 136
                     8*******************9954334455566**************************************************999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.36543108IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-443107IPR009057Homeodomain-like
PfamPF138371.2E-1143132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLMALEQQVS LNPVDGETNG VDARHPTSAE TGDDASKAPR LPRWTRQEIL VLINGKRYAE  60
SRGGGRTPRS DFGSGQAEPK WAAVSTYCKK HGVNRGPVQC RKRWSNLAGD FKKIREWEVQ  120
RKDETESFWV MRNDLRRERK LPGFFDKEVY DIMEAVPGAP ISLALPGPTR VESEDVKEEG  180
MTEEAENLFD SIQRPTEDGL FSDDESGRSP EKEVRFKEGP GSTTVISGPL PISEKQYKPI  240
PQGCQGQDQK QPASIPEIGS TSQDRKRKRF TVDVDDETSN LQNQLIDVME RNGKVLSDYL  300
HAQNSHSQLD REQRKEHSDS LIAVLNKLAD AFMRIAEKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016646887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016646887.10.0PREDICTED: trihelix transcription factor ASR3 isoform X2
SwissprotQ8VZ202e-95ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A251R1C50.0A0A251R1C5_PRUPE; Uncharacterized protein
STRINGXP_008222392.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-98Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]