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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_016516180.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
HB-other |
| Protein Properties |
Length: 339aa MW: 38440.3 Da PI: 4.9289 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016516180.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30.7 | 5.3e-10 | 275 | 322 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
+++k qle+Le+++++++ p+ +++ + + ++L+ ++V WF rR
XP_016516180.1 275 RIKKVQLETLEQVYRRSKRPTNAMINSIVHVTNLPRKRVLKWFEDRRS 322
68899******************************************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MASASTTLRI SITLRCSTND LHLLAGQPRS RTNVVLPLHS SSSRPSSSVL TFSRRRSNSA 60
NSAITSSKKK KKSPPTIDTE ENGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK 120
LERELEEALK DDELLGEIAS IANEKIESED EDEEVVANDD NEDDKDEELP VKLKNWQLKK 180
LGYALRKGRR KTNIKNLAAE LCLDRAIVLE LLRNPPPNLL LLSDALPDEP APRMIEPESK 240
PQETVPIEIS DVARLEAKVE TPVHVMQSSW SAQKRIKKVQ LETLEQVYRR SKRPTNAMIN 300
SIVHVTNLPR KRVLKWFEDR RSEEGVPDHR RPYQPLSKS
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 53 | 71 | RRRSNSANSAITSSKKKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009265 | 1e-109 | AP009265.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence. |
| GenBank | HG975520 | 1e-109 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
| Publications
? help Back to Top |
- García-Andrade J,Ramírez V,López A,Vera P
Mediated plastid RNA editing in plant immunity.
PLoS Pathog., 2013. 9(10): p. e1003713
[PMID:24204264] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
Plant J., 2014. 78(2): p. 227-40
[PMID:24506441]
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