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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_016516166.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
NAC |
Protein Properties |
Length: 399aa MW: 45337.1 Da PI: 7.4936 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_016516166.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 173.7 | 5.4e-54 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+
XP_016516166.1 22 LPPGFRFHPTDEELITFYLASKVFNGTFCG-IQIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 115
79*************************877.67***************8888999**************************************99 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+l g+kktLvfykgrapkgekt+Wvmheyrl
XP_016516166.1 116 tNGALLGMKKTLVFYKGRAPKGEKTKWVMHEYRL 149
78899***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010014 | Biological Process | meristem initiation |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MLSMEEILCE LSRDDMNNEK GLPPGFRFHP TDEELITFYL ASKVFNGTFC GIQIAEVDLN 60 RCEPWELPEV AKMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYSATNGAL 120 LGMKKTLVFY KGRAPKGEKT KWVMHEYRLD GDFSYRYSSK EEWVICRILH KIGEKKNPIY 180 QAAGQNYGYP TSLKTWPSSS FLNTAAPNPI LAETPNPKTT TTTHWQESFQ ISQNSVQSLH 240 NLYLFHHQEN DLMKSLFSPI NVSQTNLFPI NNSDLSSAAS FSTSQSTKKY KEDINKNSSI 300 SSFLFSNSFC TSKKNEKQQV PLMQANTTMK TEASFSPYSG CYNDQNPMAS TFGMNNSSDW 360 SLVGIEGMHF NGGCTQSQMV LDHMNCPIKI TAESWPLDL
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB255374 | 1e-171 | AB255374.1 Petunia x hybrida PhCUC3 mRNA for CUP-SHAPED COTYLEDON3, complete cds. |