PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515462.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 580aa    MW: 66093.3 Da    PI: 5.7362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11319361754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  XP_016515462.1 319 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 361
                     68*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-176153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.586312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-11314366No hitNo description
SuperFamilySSF474594.97E-16315375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9319362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16319375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MELMHLMERL RPIMGLKNWD YCVLWKLSED QRFLEWICCC CGGAEQNMHS CEQELLFPDS  60
STSPCRDVMF QHPRTTACDL LAQLPSSLAL DSGIYAQALL SNQAKWVNFV PFSESNVSNE  120
IIGTKVLIPS PLGLLELFGA KQLPEDEKVI DFVSTQCNIY LEQHKFPSNG DDNTNSQNLY  180
QQIVSPVTSR DHSDQLSYDF PLKRKNLDTS SMNFLPHFNT YNTSEIENNT TTMLFDQNTS  240
DVTHFSTSME NKYMSEMDAY LQKQMMRNSS NQTGLIDDES VKQHDNGRSN SGSDSDQNED  300
EDDPKFRRRN GKGQSKNLVA ERKRRKKLNE RLYALRALVP KISKLDRASI LGDAIEYVME  360
LEKQVKDLQL ELEEHSDDDQ GGRNQNQVQP EVLGQNGSDQ NNRPKSENVK LSNGSHTGIS  420
ANSNGSIDPS RQNQEVEDND KLQQMEPQVE VAQLDGNEFF VKVFREHKAG GFVRILEALN  480
SLGLAVTNVN ATRHTCLVSS IFKVEKRDNE MVQADHVRES LLELTRNPSK GWSEMGRPSS  540
ENNANGSTNY LHNNQHQHHL ENNHQKQAAN SHHFHRHHHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306326RRRNGKGQSKNLVAERKRRKK
2320327ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-102HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515457.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_016515458.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_016515459.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_016515460.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_016515462.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A1S4DPV40.0A0A1S4DPV4_TOBAC; transcription factor ABORTED MICROSPORES-like
STRINGXP_009786139.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-131bHLH family protein