PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515360.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 482aa    MW: 54584.3 Da    PI: 8.765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001284103221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ CgksF ++  L  H++
  XP_016515360.1  84 VCKECGKSFQSWKALFGHMK 103
                     6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-4531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159931IPR007087Zinc finger, C2H2
PfamPF139121.3E-6932IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-10931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-1078105No hitNo description
SMARTSM003550.007883105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11883110IPR007087Zinc finger, C2H2
PfamPF139122.1E-885107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM003550.095319341IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.18E-7319341No hitNo description
PfamPF139125.4E-11319343IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658319346IPR007087Zinc finger, C2H2
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-7392419No hitNo description
SMARTSM003550.16397419IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-10397420IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18397424IPR007087Zinc finger, C2H2
PROSITE patternPS000280399419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKEDQELKYV CKFCNKSFPC GRSLGGHMRS HLINSSFDQT KKKLPSIEAS SPIADYGLRE  60
NPKKASKFAE SSEDTNLVPN QIKVCKECGK SFQSWKALFG HMKCHSEKII SYMNSTVEED  120
SWNNDANYAI HKQVMDIQSD TETATPNKKK RSSRKIKRYI TTTTSSTVTE IEQEQEEVAM  180
SLIILSKDSG NWVGLNLFTD ENGSKISKCK DGELVKLKKV KNGKPEQGES SKSNARALRI  240
PRNGYKMDKS EESDDKQKKI KEDKENRFEE SQIEVHYKLD KGSYSKKRNF EMNECDISVD  300
SNTKKLRDHD SDSEKKIKFE CTTCNKSFYS YQALGGHRAS HKRTKGCENI TIAIEHTQNQ  360
AADNKLTNTK NSSNDSTIDE FGEKVETSSV SKKLKGYECP ICFKIFQSGQ ALGGHKRSHL  420
IAKAKSNNQA VILQKPTPEI RDFLDLNLPA PVEEESSEHV GFQTWWIGSS HKHEQLVGLI  480
SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515360.10.0PREDICTED: zinc finger protein ZAT9-like isoform X1
TrEMBLA0A1S4DPL60.0A0A1S4DPL6_TOBAC; zinc finger protein ZAT9-like isoform X1
STRINGXP_009595361.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-27C2H2-like zinc finger protein